Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPAG1_RS00215 | Genome accession | NC_008086 |
| Coordinates | 38692..38805 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori HPAG1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 33692..43805
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPAG1_RS00190 (HPAG1_0031) | - | 33749..35974 (+) | 2226 | WP_001051477.1 | AAA family ATPase | - |
| HPAG1_RS00195 (HPAG1_0032) | panD | 35964..36314 (+) | 351 | WP_000142242.1 | aspartate 1-decarboxylase | - |
| HPAG1_RS00200 (HPAG1_0033) | - | 36325..36618 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPAG1_RS00205 (HPAG1_0034) | - | 36618..37613 (+) | 996 | WP_000902477.1 | PDZ domain-containing protein | - |
| HPAG1_RS00210 (HPAG1_0035) | comB6 | 37621..38676 (+) | 1056 | WP_000786698.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPAG1_RS00215 (HPAG1_0036) | comB7 | 38692..38805 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPAG1_RS00220 (HPAG1_0037) | comB8 | 38802..39545 (+) | 744 | WP_000660522.1 | type IV secretion system protein | Machinery gene |
| HPAG1_RS00225 (HPAG1_0038) | comB9 | 39545..40522 (+) | 978 | WP_041200028.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPAG1_RS00230 (HPAG1_0039) | comB10 | 40515..41645 (+) | 1131 | WP_001045873.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPAG1_RS00235 (HPAG1_0040) | - | 41715..43127 (+) | 1413 | WP_000694794.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=25954 HPAG1_RS00215 WP_001217873.1 38692..38805(+) (comB7) [Helicobacter pylori HPAG1]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=25954 HPAG1_RS00215 WP_001217873.1 38692..38805(+) (comB7) [Helicobacter pylori HPAG1]
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |