Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SALA_RS15200 Genome accession   NC_008048
Coordinates   3130758..3131279 (+) Length   173 a.a.
NCBI ID   WP_011543257.1    Uniprot ID   Q1GNS9
Organism   Sphingopyxis alaskensis RB2256     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3125758..3136279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALA_RS15175 - 3125911..3126573 (+) 663 WP_153802723.1 hypothetical protein -
  SALA_RS15180 (Sala_2984) - 3126615..3127700 (-) 1086 WP_011543253.1 alkene reductase -
  SALA_RS15185 (Sala_2985) - 3127902..3128567 (+) 666 WP_041383430.1 COQ9 family protein -
  SALA_RS15190 (Sala_2986) - 3128623..3128868 (+) 246 WP_041383431.1 FeoA family protein -
  SALA_RS15195 (Sala_2987) - 3128865..3130724 (+) 1860 WP_011543256.1 ferrous iron transporter B -
  SALA_RS15200 (Sala_2988) ssb 3130758..3131279 (+) 522 WP_011543257.1 single-stranded DNA-binding protein Machinery gene
  SALA_RS15205 (Sala_2989) - 3131292..3131771 (+) 480 WP_011543258.1 MmcB family DNA repair protein -
  SALA_RS15210 (Sala_2990) - 3131768..3132385 (-) 618 WP_011543259.1 riboflavin synthase -
  SALA_RS15215 (Sala_2991) ribD 3132395..3133339 (-) 945 WP_041384199.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  SALA_RS15220 (Sala_2992) - 3133374..3133838 (-) 465 WP_011543261.1 hypothetical protein -
  SALA_RS15225 (Sala_2993) - 3134117..3134578 (-) 462 WP_011543262.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 17923.67 Da        Isoelectric Point: 5.0093

>NTDB_id=25935 SALA_RS15200 WP_011543257.1 3130758..3131279(+) (ssb) [Sphingopyxis alaskensis RB2256]
MAGSVNKVILIGNLGADPEIKSFQNGGKIANIRIATSEQWKDRMTGERKERTEWHNVVINGEGLVGVVERYLKKGSKVYV
EGSLRTRKWQDRDGNDRYTTEVVIAGMGGNLTMLDGAPGGGARGGGGDSWNQGGGSSGGWDQGGSGGGGSGGGGAPGGGR
PPFDDDLDDDVPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=25935 SALA_RS15200 WP_011543257.1 3130758..3131279(+) (ssb) [Sphingopyxis alaskensis RB2256]
ATGGCTGGCAGCGTCAACAAGGTAATTCTCATCGGCAACCTCGGCGCCGATCCCGAAATCAAGTCGTTCCAGAATGGCGG
CAAGATCGCCAACATCCGCATCGCGACATCCGAACAGTGGAAGGACCGGATGACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCATAATGTCGTGATCAACGGCGAAGGGCTGGTCGGCGTCGTCGAACGCTATCTCAAGAAGGGCAGCAAGGTTTATGTC
GAGGGCAGCCTGCGCACCCGCAAGTGGCAGGACCGCGACGGCAACGACCGTTATACGACCGAAGTGGTGATTGCCGGCAT
GGGCGGCAATCTGACGATGCTCGACGGCGCGCCCGGTGGCGGCGCGCGCGGTGGCGGCGGCGATAGCTGGAATCAGGGCG
GCGGTTCGAGCGGCGGCTGGGATCAGGGGGGCAGCGGCGGCGGCGGTTCGGGCGGCGGCGGCGCGCCGGGTGGCGGACGC
CCGCCGTTCGACGATGATCTGGACGATGACGTCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1GNS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.059

100

0.509
  ssb Vibrio cholerae strain A1552

48.555

100

0.486
  ssb Neisseria meningitidis MC58

37.705

100

0.399
  ssb Neisseria gonorrhoeae MS11

37.705

100

0.399

Multiple sequence alignment