Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   DOP62_RS07890 Genome accession   NZ_CP030139
Coordinates   1616867..1617016 (+) Length   49 a.a.
NCBI ID   WP_370538766.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11801     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1611867..1622016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS07865 (DOP62_13735) - 1612969..1613130 (+) 162 WP_208675815.1 hypothetical protein -
  DOP62_RS07870 (DOP62_04070) argH 1613238..1614638 (+) 1401 WP_208675814.1 argininosuccinate lyase -
  DOP62_RS07875 (DOP62_04065) - 1614806..1615117 (+) 312 WP_261790002.1 hypothetical protein -
  DOP62_RS07880 (DOP62_04060) - 1615114..1616010 (-) 897 WP_208675812.1 TIGR01777 family oxidoreductase -
  DOP62_RS07885 (DOP62_04055) psb28 1616028..1616402 (-) 375 WP_208675811.1 photosystem II reaction center protein Psb28 -
  DOP62_RS07890 (DOP62_04050) pilA/pilA1 1616867..1617016 (+) 150 WP_370538766.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DOP62_RS07895 (DOP62_04045) - 1617668..1618219 (-) 552 WP_208675810.1 hypothetical protein -
  DOP62_RS07900 (DOP62_04040) - 1618806..1619024 (+) 219 WP_208675808.1 NAD(P)H-quinone oxidoreductase subunit O -
  DOP62_RS07905 (DOP62_04035) - 1619096..1619713 (+) 618 WP_208675806.1 hypothetical protein -
  DOP62_RS07910 - 1619826..1619927 (+) 102 Protein_1558 hypothetical protein -
  DOP62_RS07915 (DOP62_13740) - 1619949..1620104 (+) 156 WP_261790001.1 DUF29 domain-containing protein -

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5132.95 Da        Isoelectric Point: 5.9864

>NTDB_id=259293 DOP62_RS07890 WP_370538766.1 1616867..1617016(+) (pilA/pilA1) [Synechococcus elongatus PCC 11801]
MTRTSRSQGFTITEILIVIIIVGILAAVATPSLAGFVGQQQTNQATSEV

Nucleotide


Download         Length: 150 bp        

>NTDB_id=259293 DOP62_RS07890 WP_370538766.1 1616867..1617016(+) (pilA/pilA1) [Synechococcus elongatus PCC 11801]
TTGACCCGCACCTCGCGATCCCAAGGTTTTACAATCACTGAAATTTTAATTGTGATTATCATTGTCGGCATTCTGGCAGC
AGTTGCCACACCAAGCTTGGCAGGCTTTGTTGGACAACAACAAACGAATCAAGCTACGAGCGAAGTTTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Synechocystis sp. PCC 6803

42.553

95.918

0.408
  pilE Neisseria gonorrhoeae MS11

50

77.551

0.388
  pilE Neisseria gonorrhoeae strain FA1090

50

77.551

0.388
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.517

59.184

0.388
  pilA Acinetobacter baumannii strain A118

42.857

85.714

0.367