Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSEEN_RS24900 Genome accession   NC_008027
Coordinates   5702386..5703873 (+) Length   495 a.a.
NCBI ID   WP_011536358.1    Uniprot ID   Q1I2Y5
Organism   Pseudomonas entomophila L48     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5697386..5708873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEEN_RS24885 (PSEEN5382) - 5697911..5698273 (+) 363 WP_011536355.1 DUF2493 domain-containing protein -
  PSEEN_RS24890 (PSEEN5383) - 5698461..5700461 (+) 2001 WP_011536356.1 DUF4034 domain-containing protein -
  PSEEN_RS24895 (PSEEN5384) - 5700466..5702274 (+) 1809 WP_011536357.1 M48 family metallopeptidase -
  PSEEN_RS24900 (PSEEN5385) comM 5702386..5703873 (+) 1488 WP_011536358.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSEEN_RS24905 (PSEEN5386) - 5704099..5704350 (+) 252 WP_011536359.1 DUF2790 domain-containing protein -
  PSEEN_RS24910 (PSEEN5387) - 5704382..5705398 (+) 1017 WP_011536360.1 alpha/beta hydrolase -
  PSEEN_RS24915 (PSEEN5389) - 5705630..5707417 (+) 1788 WP_011536361.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  PSEEN_RS24920 (PSEEN5390) - 5707421..5707699 (-) 279 WP_044488574.1 HigA family addiction module antitoxin -
  PSEEN_RS24925 (PSEEN5391) - 5708341..5708634 (+) 294 WP_044488576.1 DUF3077 domain-containing protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52921.71 Da        Isoelectric Point: 7.6914

>NTDB_id=25916 PSEEN_RS24900 WP_011536358.1 5702386..5703873(+) (comM) [Pseudomonas entomophila L48]
MSLALVHSRAQVGVLAPPVSVETHLANGLPTLTLVGLPEATVKESKDRVRSAIVNSGLDYPARRITQNLAPADLPKDGGR
YDLAIALGILAANGQVPAATLDDIECLGELALSGALRPVQGVLPAALAARDAGRALVVPRENAEEASLASGLVVYAVGTL
QELVAHLSGQLPLPPYAANGLLLEQRPYPDLSEVQGQVAAKRALLVAAAGGHNLLFTGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGHAPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRVRFPARFQLVAAMNPCPCGYFGDPTGRCRCSPEQIQRYRNKLSGPLLDRIDLHLTVARESTVLNSQPSG
ETSSSVARVVAEARELQQRRQGCTNAFLDLKGLRRHCPLEPADQAWLETACERLTLSLRAAHRLLKVARTLADLEQAPSI
TRSHLAEALQYRPSA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=25916 PSEEN_RS24900 WP_011536358.1 5702386..5703873(+) (comM) [Pseudomonas entomophila L48]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGGGTGCTGGCACCACCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCACGCTCACCCTGGTCGGTTTGCCGGAGGCCACGGTCAAGGAGAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCGGGGCTGGACTACCCAGCCCGGCGCATCACCCAGAACCTCGCCCCCGCCGACTTGCCCAAGGACGGCGGGCGC
TATGACCTGGCCATCGCCCTGGGTATCCTCGCCGCCAACGGCCAGGTGCCGGCGGCCACCCTCGATGACATCGAATGCCT
GGGCGAGCTGGCCTTGTCCGGGGCGTTGCGGCCAGTTCAGGGGGTGCTGCCTGCAGCCCTCGCCGCACGCGATGCCGGCC
GGGCGCTGGTGGTACCCCGAGAGAATGCCGAAGAGGCCAGCCTGGCCAGCGGGTTGGTGGTGTATGCCGTTGGCACTCTG
CAGGAACTGGTCGCCCACCTGAGCGGGCAACTGCCCCTGCCACCCTACGCGGCTAATGGCTTGCTACTGGAACAACGGCC
CTACCCAGACCTGAGCGAAGTCCAGGGCCAGGTCGCCGCCAAACGCGCCCTGCTGGTGGCGGCCGCCGGAGGGCACAACC
TGCTGTTCACAGGCCCGCCCGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGGACGAG
CGCGAGGCGCTGGAGGTGGCGGCCATCCGCTCGGTCAGCGGCCATGCTCCGCTCGACTGCTGGCCGCAGCGGCCATTTCG
TCATCCCCACCATTCCGCATCCGGCCCGGCGCTGGTCGGGGGTGGCAGCCGACCGCAGCCCGGCGAGATCACCCTGGCGC
ACCACGGCGTGCTGTTTCTCGACGAGCTACCGGAGTTCGAGCGACGCGTGCTGGAGGTGCTGCGTGAGCCGCTGGAATCC
GGCGAGATCGTGGTGGCCCGGGCCAAGGACCGGGTGCGCTTTCCGGCGCGTTTCCAGCTGGTAGCGGCGATGAACCCCTG
CCCCTGCGGTTACTTCGGCGACCCCACCGGCCGCTGCCGTTGCAGCCCCGAGCAGATCCAGCGTTATCGCAACAAACTCT
CCGGCCCCCTGCTCGATCGTATCGACCTGCATCTTACCGTGGCCCGCGAAAGCACCGTGCTGAACAGCCAGCCCAGCGGT
GAGACCAGCTCCAGTGTTGCCCGCGTGGTCGCCGAGGCTCGCGAGTTGCAGCAACGCCGCCAAGGCTGCACCAATGCCTT
CCTTGACCTTAAAGGCCTGCGCCGGCACTGCCCGCTGGAACCGGCTGACCAGGCTTGGCTGGAGACGGCCTGTGAACGCT
TGACCTTATCGTTGCGGGCAGCACACCGGCTGTTGAAGGTGGCCCGCACGCTGGCAGACCTGGAACAGGCCCCCTCCATC
ACCAGGTCGCACCTGGCCGAAGCGCTGCAGTACCGGCCCAGCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1I2Y5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.2

100

0.558
  comM Glaesserella parasuis strain SC1401

54.4

100

0.549
  comM Vibrio campbellii strain DS40M4

54.747

100

0.547
  comM Vibrio cholerae strain A1552

54.343

100

0.543
  comM Legionella pneumophila str. Paris

49.194

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.41

100

0.481

Multiple sequence alignment