Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CXB48_RS02660 Genome accession   NZ_CP025149
Coordinates   563063..564559 (-) Length   498 a.a.
NCBI ID   WP_108241399.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SGAir0442     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 558063..569559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB48_RS02650 (CXB48_02645) - 559283..560920 (+) 1638 WP_017246172.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  CXB48_RS02655 (CXB48_02650) - 560960..562933 (-) 1974 WP_053526892.1 BCCT family transporter -
  CXB48_RS02660 (CXB48_02655) comM 563063..564559 (-) 1497 WP_108241399.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CXB48_RS02665 (CXB48_02660) - 564596..564856 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  CXB48_RS02670 (CXB48_02665) glnK 565253..565591 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  CXB48_RS02675 (CXB48_02670) - 565630..566946 (+) 1317 WP_011911736.1 ammonium transporter -
  CXB48_RS02680 (CXB48_02675) - 567063..568313 (+) 1251 WP_014595677.1 ammonium transporter -
  CXB48_RS02685 (CXB48_02680) - 568415..568828 (+) 414 Protein_533 secondary thiamine-phosphate synthase enzyme YjbQ -
  CXB48_RS02690 (CXB48_02685) sutA 568918..569247 (+) 330 WP_011911739.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53113.02 Da        Isoelectric Point: 7.7464

>NTDB_id=258663 CXB48_RS02660 WP_108241399.1 563063..564559(-) (comM) [Stutzerimonas stutzeri strain SGAir0442]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGERLEQLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVFAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLQHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAAPQT
AQSSAVLAAQVAEARRLQLARQGCANAFLDLVGLREHCQLTAEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
IGRQHLAEALQYRPGSQG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=258663 CXB48_RS02660 WP_108241399.1 563063..564559(-) (comM) [Stutzerimonas stutzeri strain SGAir0442]
ATGTCCCTGGCCATCGTCCATAGCCGCGCTCAGATCGGCGTCGAAGCCCCGGCGGTGACCGTCGAGGCGCATCTGGCCAA
CGGCCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCCGTCAAGGAGAGCAAGGACCGGGTGCGCAGCGCCATCC
TTACCTCCGGTTTCGATTTCCCCGCCCGACGCATCACGCTCAATCTCGCCCCTGCCGATCTGCCCAAGGACGGTGGTCGC
TTCGACCTGGCCATCGCGCTGGGCATCCTCGCCGCCAGCGGACAGCTGCCCGGCGAACGTCTGGAGCAGCTGGAATGCCT
GGGCGAACTGGCGTTGTCCGGCGCCTTGCGCCCGGTCCAGGGCGTGCTGCCGGCCGCCCTCGCCGCGCGTGCCGCCGGCC
GTGCGCTGCTGGTGCCGCGAGCCAATGCCGAGGAGGCCAGCCTCGCCTCGGGCCTGACCGTGTTTGCCGCCGAGCATCTG
CTGGAAGTTGCCGCCCACTTCAACGGCGTTACCCCGCTCGAGCCTTACGTGGCCCAGGGGCTGCTGCGGCAGGTCCAGCC
CTACCCCGACCTGGCCGACGTACAGGGCCAGCAGGCGGCCAAACGCGGCCTGCTGATCGCCGCGGCCGGCGCACACAACC
TGTTGTTCTCCGGGCCGCCCGGCACCGGCAAGACGCTATTGGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGGATGAG
CAGGAGGCGCTGGAAGTGGCCGCGATTCATTCGGTGGCCAGCCACAGCCCGCTGCAGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCCCATCACAGTGCATCGGGCCCGGCGCTGGTGGGTGGCGGCAGCCGGCCGCAACCGGGCGAGATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAGCTACCGGAGTTCGACCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTGGAATCG
GGCCATATCGTCATCGCCCGGGCGCGGGACAAGGTGCGTTTTCCGGCGCGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCGTGCGGCTATCTGGGCGACCCTAATGGTCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGACCGCTGCTCGACCGCATCGACCTGCATCTGACCGTGGCGCGCGAGGCCACCGCCCTCAACGCAGCGCCACAGACC
GCCCAGAGCAGCGCCGTGCTCGCCGCACAGGTGGCCGAGGCGCGGCGACTGCAACTCGCCCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGGTCGGCCTGCGTGAGCACTGCCAGCTGACCGCCGAGGACCAGGCCTGGCTGGAGCGCGCCTGCGAGC
GTCTCGCACTGTCCCTGCGCGCCGCACACCGGTTGCTCAAGGTCGCACGCACCCTGGCCGACCTGGAGCAGGCCGAACGC
ATCGGCCGGCAACATCTGGCCGAAGCGCTGCAATATCGCCCCGGCAGCCAGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.578

100

0.56
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

54.89

100

0.552
  comM Legionella pneumophila str. Paris

50.988

100

0.518
  comM Legionella pneumophila strain ERS1305867

50.988

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.464

Multiple sequence alignment