Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CW734_RS18010 Genome accession   NZ_CP025135
Coordinates   3363043..3363537 (-) Length   164 a.a.
NCBI ID   WP_069577003.1    Uniprot ID   -
Organism   Planococcus sp. MB-3u-03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3358043..3368537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW734_RS17995 (CW734_18000) - 3358188..3360164 (-) 1977 WP_101192090.1 DHH family phosphoesterase -
  CW734_RS18000 (CW734_18005) - 3360179..3361132 (-) 954 WP_101192258.1 YybS family protein -
  CW734_RS18005 (CW734_18010) rpsR 3362753..3362989 (-) 237 WP_058382282.1 30S ribosomal protein S18 -
  CW734_RS18010 (CW734_18015) ssbA 3363043..3363537 (-) 495 WP_069577003.1 single-stranded DNA-binding protein Machinery gene
  CW734_RS18015 (CW734_18020) rpsF 3363589..3363876 (-) 288 WP_101192091.1 30S ribosomal protein S6 -
  CW734_RS18020 (CW734_18025) - 3364042..3364593 (+) 552 WP_101192092.1 DUF3267 domain-containing protein -
  CW734_RS18030 (CW734_18035) - 3364872..3365255 (-) 384 WP_101192093.1 gamma-glutamylcyclotransferase -
  CW734_RS18035 (CW734_18040) ychF 3365384..3366484 (-) 1101 WP_101192260.1 redox-regulated ATPase YchF -
  CW734_RS18040 (CW734_18045) - 3366565..3366765 (-) 201 WP_058382277.1 DUF951 domain-containing protein -
  CW734_RS18045 (CW734_18050) - 3366781..3367683 (-) 903 WP_308302132.1 mechanosensitive ion channel family protein -
  CW734_RS18050 (CW734_18055) - 3367706..3368419 (-) 714 WP_101192094.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17903.50 Da        Isoelectric Point: 4.9719

>NTDB_id=258551 CW734_RS18010 WP_069577003.1 3363043..3363537(-) (ssbA) [Planococcus sp. MB-3u-03]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEREADFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSAGSGSGDRSNDRSYGQQPSYQQNQPSSPSQQNNTRVDDDPFSSGSGKIEVSDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=258551 CW734_RS18010 WP_069577003.1 3363043..3363537(-) (ssbA) [Planococcus sp. MB-3u-03]
ATGATCAACCGGGTTGTATTGGTCGGAAGACTGACAAAAGATCCTGATCTTCGTTACACGCCAAGCGGGGCGGCGGTGGC
TCGTTTTACACTTGCTGTAAACCGGACATTCTCCAATGCGCAAGGTGAACGCGAAGCAGATTTTATCAATTGTACCGTTT
GGCGCAAGCAGGCTGAAAACACAGCGAATTTCCTCAAAAAAGGAAGTCTCGCCGGTGTCGAAGGCCGCATTCAGACTGGC
AGCTACGAGGGTCAAGATGGCAAGCGCGTTTATACGACGGAAGTGGTGGCAGACAGCGTTCAATTCCTTGAACCGAAAAG
CGCCGGCTCCGGATCTGGGGATCGTTCAAACGATCGCTCGTATGGACAGCAGCCATCTTATCAACAGAACCAACCGTCTA
GTCCAAGTCAGCAAAACAATACTCGCGTAGATGACGATCCGTTTTCAAGCGGAAGCGGGAAGATCGAAGTTTCGGACGAC
GATCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.047

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

56.647

100

0.598
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.868

64.634

0.445
  ssb Neisseria gonorrhoeae MS11

34.637

100

0.378
  ssb Vibrio cholerae strain A1552

33.702

100

0.372

Multiple sequence alignment