Detailed information NTG0258114

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: DK235_RS10050
• Genome accession: NZ_CP030017
• Coordinates: 2060099..2061193 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain ISU1606
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2055099..2066193

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK235_RS10025 (DK235_10400)	pgsA	2055618..2056157 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
DK235_RS10030 (DK235_10405)	rodZ	2056167..2057024 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
DK235_RS10035 (DK235_10410)	yfmH	2057106..2058389 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
DK235_RS10040 (DK235_10415)	yfmF	2058386..2059639 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
DK235_RS10045 (DK235_10420)	yaaA	2059713..2060096 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
DK235_RS10050 (DK235_10425)	recF	2060099..2061193 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
DK235_RS10055 (DK235_10430)	guaB	2061465..2062946 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
DK235_RS10060 (DK235_10435)	trpS	2063178..2064203 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
DK235_RS10065 (DK235_10440)	-	2064558..2065430 (+)	873	WP_012775460.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=258114 DK235_RS10050 WP_012028050.1 2060099..2061193(+) (recF) [Streptococcus suis strain ISU1606]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=258114 DK235_RS10050 WP_012028050.1 2060099..2061193(+) (recF) [Streptococcus suis strain ISU1606]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442