Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RMET_RS01205 Genome accession   NC_007973
Coordinates   253220..254758 (-) Length   512 a.a.
NCBI ID   WP_011515136.1    Uniprot ID   Q1LRV3
Organism   Cupriavidus metallidurans CH34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 248220..259758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMET_RS01185 (Rmet_0233) - 250374..250913 (-) 540 WP_008652614.1 TlpA disulfide reductase family protein -
  RMET_RS01190 (Rmet_0234) - 251042..251539 (-) 498 WP_011515133.1 thioredoxin family protein -
  RMET_RS01195 (Rmet_0235) - 251672..252259 (+) 588 WP_029306767.1 hypothetical protein -
  RMET_RS01200 (Rmet_0236) - 252302..252946 (+) 645 WP_011515135.1 LysE family transporter -
  RMET_RS33475 - 253028..253168 (+) 141 WP_155877842.1 hypothetical protein -
  RMET_RS01205 (Rmet_0237) comM 253220..254758 (-) 1539 WP_011515136.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RMET_RS01210 (Rmet_0238) - 254841..255098 (-) 258 WP_008652257.1 accessory factor UbiK family protein -
  RMET_RS01215 (Rmet_0239) - 255651..256451 (+) 801 WP_011515137.1 TorF family putative porin -
  RMET_RS01220 (Rmet_0240) - 256504..256842 (+) 339 WP_008652254.1 P-II family nitrogen regulator -
  RMET_RS01225 (Rmet_0241) - 256874..258406 (+) 1533 WP_011515138.1 ammonium transporter -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 55246.08 Da        Isoelectric Point: 7.7971

>NTDB_id=25777 RMET_RS01205 WP_011515136.1 253220..254758(-) (comM) [Cupriavidus metallidurans CH34]
MSLAVLRSRALTGIEAPPVSVEIHLANGLPAFNIVGLADTEVRESRERVRAALLNSEFEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQLQADTLDAFEFAGELSLAGDLRPVRGALAMAMGLARDNARRVAEDRPPRAFVVASENGAEAALVE
AVIVHAGATLRDVCHHIGLLPERPLPRARPPARVEASADGPDMRDVRGQAQARRAMEIAAAGQHSVLLVGPPGTGKSMLA
QRFPALLPPMTEAEALEAAAVQSLTSGGFHPSRWGHRPFRSPHHTASAPALVGGGASPRPGEISLAHHGVLFLDELPEFE
RRVLEVLREPLETGRITISRAAGQADFPARFQFVAAMNPCPCGYLGHPTRMCRCTPDQVQRYQSRLSGPLLDRVDLQIEV
PAQSQQEMFDGQPGEPSQTVRARAVVARERQLTRQGTPNSELAGRAIETHCPLDNEARTLLRDAMQKLGWSARAYFRVLK
VARTIADLDGAEVLTAGHVAEAIQYRRVLRTA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=25777 RMET_RS01205 WP_011515136.1 253220..254758(-) (comM) [Cupriavidus metallidurans CH34]
ATGAGCCTAGCCGTCCTGCGCAGCCGCGCCCTGACTGGAATCGAGGCACCGCCCGTCTCCGTCGAAATCCACCTCGCGAA
CGGGTTGCCCGCCTTCAATATCGTCGGGCTGGCCGATACCGAAGTCCGCGAGAGCCGCGAGCGCGTGCGCGCGGCACTGC
TCAACAGCGAGTTCGAATTTCCCAACCGGCGCATCACGGTCAACCTGGCGCCCGCCGATCTGCCCAAGGAGTCCGGTCGT
TTCGACCTGGCGATTGCGCTGGGCATCCTGGCGGCCAGCGGGCAGTTGCAGGCCGATACGCTCGACGCCTTCGAGTTCGC
CGGCGAGCTTTCGCTGGCGGGAGATCTGCGCCCGGTACGCGGCGCGCTCGCGATGGCAATGGGACTGGCCCGCGACAACG
CCCGACGCGTAGCAGAGGATCGCCCGCCGCGCGCCTTCGTCGTCGCCAGCGAGAATGGCGCGGAAGCGGCCCTGGTCGAA
GCCGTGATCGTCCATGCCGGCGCGACACTGCGCGACGTCTGCCATCACATCGGCCTGCTTCCCGAGCGGCCGCTGCCGCG
CGCCCGGCCGCCAGCCCGGGTTGAGGCATCCGCCGATGGCCCCGATATGCGCGACGTTCGCGGCCAGGCACAAGCCCGAC
GCGCCATGGAGATCGCCGCCGCGGGTCAGCACTCCGTACTGCTGGTCGGCCCGCCCGGCACCGGCAAATCGATGCTGGCC
CAGCGCTTCCCTGCCCTGCTGCCGCCGATGACCGAGGCCGAAGCGCTCGAGGCAGCGGCCGTGCAGAGCCTGACCTCGGG
CGGCTTCCACCCGTCCCGCTGGGGCCATCGCCCGTTCCGCAGCCCGCACCATACGGCCAGCGCGCCTGCCCTGGTCGGCG
GGGGCGCCTCGCCACGCCCCGGAGAAATATCGCTGGCGCATCACGGCGTGCTCTTTCTCGACGAACTGCCCGAGTTTGAA
CGGCGCGTGCTCGAAGTCCTGCGCGAGCCGCTCGAAACCGGCCGCATCACGATCTCGCGTGCCGCCGGGCAGGCCGATTT
CCCGGCGCGCTTCCAGTTCGTGGCGGCGATGAATCCCTGCCCTTGCGGCTACCTCGGACACCCCACCCGCATGTGCCGCT
GCACGCCGGATCAGGTGCAGCGCTACCAGTCACGCCTGTCGGGCCCGCTGCTCGATCGCGTGGACCTGCAGATCGAAGTG
CCCGCCCAGAGCCAGCAGGAAATGTTCGATGGACAGCCAGGCGAGCCGAGCCAGACCGTGCGCGCCCGCGCCGTCGTCGC
ACGCGAACGTCAATTGACACGACAGGGCACGCCGAACAGCGAACTAGCTGGTCGCGCGATCGAGACACACTGCCCACTCG
ACAACGAGGCCCGAACGCTGCTGCGCGACGCGATGCAGAAGCTGGGATGGTCGGCGCGCGCGTACTTCCGGGTGCTCAAG
GTAGCCAGAACGATCGCGGACCTGGATGGCGCGGAGGTTCTGACAGCCGGCCACGTGGCCGAGGCGATTCAGTACCGGCG
CGTGCTGCGAACCGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-137)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1LRV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.479

99.023

0.51
  comM Vibrio campbellii strain DS40M4

50.881

99.805

0.508
  comM Haemophilus influenzae Rd KW20

49.708

100

0.498
  comM Legionella pneumophila strain ERS1305867

48.242

100

0.482
  comM Legionella pneumophila str. Paris

48.242

100

0.482
  comM Glaesserella parasuis strain SC1401

48.33

99.414

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.243

100

0.437

Multiple sequence alignment