Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CWI26_RS07845 Genome accession   NZ_CP025043
Coordinates   1584280..1585221 (-) Length   313 a.a.
NCBI ID   WP_100881530.1    Uniprot ID   A0A2I5KPW8
Organism   Streptococcus suis strain AH681     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1579280..1590221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS07820 (CWI26_07820) - 1579921..1580640 (-) 720 WP_044755569.1 O-methyltransferase -
  CWI26_RS07825 (CWI26_07825) - 1580715..1581263 (-) 549 WP_044689578.1 DUF6630 family protein -
  CWI26_RS07830 (CWI26_07830) - 1581274..1581717 (-) 444 WP_004299010.1 hypothetical protein -
  CWI26_RS07835 (CWI26_07835) pepF 1581719..1583521 (-) 1803 WP_100881528.1 oligoendopeptidase F Regulator
  CWI26_RS07840 (CWI26_07840) - 1583594..1584235 (-) 642 WP_100881529.1 hypothetical protein -
  CWI26_RS07845 (CWI26_07845) coiA 1584280..1585221 (-) 942 WP_100881530.1 competence protein CoiA Machinery gene
  CWI26_RS07850 (CWI26_07850) metG 1585282..1587339 (-) 2058 WP_100881531.1 methionine--tRNA ligase -
  CWI26_RS07855 (CWI26_07855) - 1587492..1588238 (-) 747 WP_100881532.1 hypothetical protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36296.82 Da        Isoelectric Point: 7.4260

>NTDB_id=257613 CWI26_RS07845 WP_100881530.1 1584280..1585221(-) (coiA) [Streptococcus suis strain AH681]
MLVVLDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRPHFAHVTLRDCTYFSENESAQHLSLKSSLYKWLQGQEE
VELEAYLPAIKQVADLLVNQQLALEVQCSSLSISRLQERTTDYQQAGIAVLWLLGKDLWLGERLTNLHKQFLYFSMNMGF
HLWELDDEKNELRLRYLIHEDLRGKVHCLTKAFPFGQGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLIKTAEEWYPHIRLPSSAIGFAQIKQDLTPIYQAFDLFYDKAKDKRKQILYPPIMYRQLV

Nucleotide


Download         Length: 942 bp        

>NTDB_id=257613 CWI26_RS07845 WP_100881530.1 1584280..1585221(-) (coiA) [Streptococcus suis strain AH681]
ATGTTAGTTGTACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCCTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTCCGCATTTTGCCCATGTCACCCTGCGGGATTGTA
CATACTTCTCCGAGAATGAGTCCGCCCAGCACCTGTCCCTCAAGTCCAGTCTGTATAAGTGGTTACAGGGTCAGGAAGAA
GTAGAGTTAGAGGCCTATCTTCCTGCAATCAAGCAGGTGGCAGATCTCTTGGTTAATCAGCAACTTGCCCTGGAAGTCCA
GTGTTCTAGCCTGTCTATTTCACGCTTGCAGGAACGGACTACGGACTACCAACAAGCAGGTATAGCTGTTCTGTGGCTTC
TGGGAAAGGATCTCTGGCTTGGAGAACGGCTGACCAATCTCCACAAACAATTTCTGTATTTTAGCATGAATATGGGTTTT
CATCTCTGGGAGTTGGATGATGAGAAGAATGAGTTAAGACTTCGTTATCTCATTCATGAAGACTTGCGGGGCAAGGTGCA
TTGTCTGACCAAGGCCTTTCCATTTGGTCAAGGGAATTTACTAGATATTTTACGGCTTCCCTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGATAAAGACGGCAGAAGAATGGTACCCACACATCCGTCT
ACCCAGCTCTGCTATTGGCTTTGCCCAAATCAAACAAGACCTGACACCGATTTACCAAGCATTTGATCTGTTTTACGACA
AAGCAAAAGATAAGAGAAAACAAATCTTGTATCCACCTATAATGTATAGACAACTTGTGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I5KPW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.205

99.681

0.53
  coiA Streptococcus pneumoniae TIGR4

51.923

99.681

0.518
  coiA Streptococcus pneumoniae Rx1

51.923

99.681

0.518
  coiA Streptococcus pneumoniae D39

51.923

99.681

0.518
  coiA Streptococcus pneumoniae R6

51.923

99.681

0.518
  coiA Lactococcus lactis subsp. cremoris KW2

42.812

100

0.438

Multiple sequence alignment