Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CWI26_RS07835 Genome accession   NZ_CP025043
Coordinates   1581719..1583521 (-) Length   600 a.a.
NCBI ID   WP_100881528.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576719..1588521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS07810 (CWI26_07810) - 1578033..1578518 (-) 486 WP_100881526.1 LURP-one-related/scramblase family protein -
  CWI26_RS07815 (CWI26_07815) prsA 1578879..1579859 (-) 981 WP_100881527.1 peptidylprolyl isomerase PrsA -
  CWI26_RS07820 (CWI26_07820) - 1579921..1580640 (-) 720 WP_044755569.1 O-methyltransferase -
  CWI26_RS07825 (CWI26_07825) - 1580715..1581263 (-) 549 WP_044689578.1 DUF6630 family protein -
  CWI26_RS07830 (CWI26_07830) - 1581274..1581717 (-) 444 WP_004299010.1 hypothetical protein -
  CWI26_RS07835 (CWI26_07835) pepF 1581719..1583521 (-) 1803 WP_100881528.1 oligoendopeptidase F Regulator
  CWI26_RS07840 (CWI26_07840) - 1583594..1584235 (-) 642 WP_100881529.1 hypothetical protein -
  CWI26_RS07845 (CWI26_07845) coiA 1584280..1585221 (-) 942 WP_100881530.1 competence protein CoiA Machinery gene
  CWI26_RS07850 (CWI26_07850) metG 1585282..1587339 (-) 2058 WP_100881531.1 methionine--tRNA ligase -
  CWI26_RS07855 (CWI26_07855) - 1587492..1588238 (-) 747 WP_100881532.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69162.33 Da        Isoelectric Point: 4.5778

>NTDB_id=257612 CWI26_RS07835 WP_100881528.1 1581719..1583521(-) (pepF) [Streptococcus suis strain AH681]
MSKQRHEIEEKYQWDLTTIFPTDDAWEAELADLQVETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=257612 CWI26_RS07835 WP_100881528.1 1581719..1583521(-) (pepF) [Streptococcus suis strain AH681]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATACCAGTGGGACTTGACCACTATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGTTGAAACTGAAAAAACAAAAGAATTTGCAGGTCACTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTCGGTCTCATGCGCCGCATTGAAAAACTCTATGTTTATGCGTCTATGAAAAACGAC
CAAGATACTCGTGAAGGCAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTCTGGCAGCCAAAGACCATGTCTTGTCACAGGAAGTAGAAGAAGTCCTGGCAGCGACC
AGCGAGATTTTTGAATCACCAGCTGAAACCTTCTCTGTCTTAGACAATGCCAGCCTACGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTACCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGTCAAGAAG
CATACGAAGCAATGTACGGTACCTATGAGCAATTCCAGCATACTTATGCTAAAACTCTTCAGTCTAACGTAAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGACTCTGCCCGCCACGCATCACTTGCGGCTAATTTCATTCCGGAATCCGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGGGA
TTGATGATTTGAAAATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTACGAAGATGCTCTAAAA
AAATGCCAAGAAACCTTGGAAATCTTTGGTGAAGATTATTCGGCTATTGTCAAAGAAGCTTTTGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACGGGGCATTCACTTCATTCTATGTTGACTCGTAAGACG
CAGCCGTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAGCGCTTTGCGATTCTCAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCTGAGTTTGAGCAAGCAATCTATAAGGCAGACCAAGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCTGCTTTGGCAA
ATAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697

Multiple sequence alignment