Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CWR52_RS10845 Genome accession   NZ_CP025034
Coordinates   2264342..2264866 (-) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter sp. SGAir0187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2259342..2269866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWR52_RS10825 (CWR52_10885) soxS 2259866..2260192 (+) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  CWR52_RS10830 (CWR52_10890) - 2260199..2261764 (-) 1566 WP_104949642.1 EAL domain-containing protein -
  CWR52_RS10835 (CWR52_10895) - 2262104..2263507 (-) 1404 WP_104949643.1 sensor domain-containing diguanylate cyclase -
  CWR52_RS10840 (CWR52_10900) - 2263999..2264280 (+) 282 WP_045261050.1 YjcB family protein -
  CWR52_RS10845 (CWR52_10905) ssb 2264342..2264866 (-) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CWR52_RS10855 (CWR52_10915) uvrA 2265117..2267939 (+) 2823 WP_104949644.1 excinuclease ABC subunit UvrA -
  CWR52_RS10860 (CWR52_10920) - 2267943..2268296 (-) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  CWR52_RS10865 (CWR52_10925) - 2268299..2268715 (-) 417 WP_045909174.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CWR52_RS10870 (CWR52_10930) aphA 2268829..2269542 (-) 714 WP_045909173.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=257514 CWR52_RS10845 WP_008503384.1 2264342..2264866(-) (ssb) [Enterobacter sp. SGAir0187]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=257514 CWR52_RS10845 WP_008503384.1 2264342..2264866(-) (ssb) [Enterobacter sp. SGAir0187]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTACCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368

Multiple sequence alignment