Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BEN53_RS20225 Genome accession   NZ_CP029747
Coordinates   3974128..3975252 (-) Length   374 a.a.
NCBI ID   WP_000228525.1    Uniprot ID   -
Organism   Escherichia coli strain 2016C-3878     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3969128..3980252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN53_RS20195 (BEN53_20195) yrdA 3970928..3971482 (+) 555 WP_001286216.1 gamma carbonic anhydrase family protein -
  BEN53_RS20200 (BEN53_20200) yrdB 3971458..3971715 (-) 258 WP_001070584.1 DUF1488 domain-containing protein -
  BEN53_RS20205 (BEN53_20205) aroE 3971712..3972530 (-) 819 WP_000451226.1 shikimate dehydrogenase -
  BEN53_RS20210 (BEN53_20210) tsaC 3972535..3973107 (-) 573 WP_001361937.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  BEN53_RS20215 (BEN53_20215) yrdD 3973112..3973654 (-) 543 WP_001129723.1 type I DNA topoisomerase -
  BEN53_RS20220 (BEN53_20220) smg 3973683..3974156 (-) 474 WP_000460682.1 DUF494 family protein Smg -
  BEN53_RS20225 (BEN53_20225) dprA 3974128..3975252 (-) 1125 WP_000228525.1 DNA-protecting protein DprA Machinery gene
  BEN53_RS20230 (BEN53_20230) def 3975382..3975891 (+) 510 WP_000114986.1 peptide deformylase -
  BEN53_RS20235 (BEN53_20235) fmt 3975906..3976853 (+) 948 WP_000004466.1 methionyl-tRNA formyltransferase -
  BEN53_RS20240 (BEN53_20240) rsmB 3976899..3978188 (+) 1290 WP_001361938.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BEN53_RS20245 (BEN53_20245) trkA 3978210..3979586 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  BEN53_RS20250 (BEN53_20250) mscL 3979716..3980126 (+) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40933.83 Da        Isoelectric Point: 6.1402

>NTDB_id=257488 BEN53_RS20225 WP_000228525.1 3974128..3975252(-) (dprA) [Escherichia coli strain 2016C-3878]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLSWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHAPLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPLGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=257488 BEN53_RS20225 WP_000228525.1 3974128..3975252(-) (dprA) [Escherichia coli strain 2016C-3878]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACTGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTCTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTTGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCGCGTCGCCATGCTCCACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCTCTTGTCTCGGAATTTCCCCTCGATGTTCCTCCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCGGGTCCATTAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTAACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

48.71

82.888

0.404
  dprA Vibrio cholerae strain A1552

48.71

82.888

0.404
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Legionella pneumophila strain ERS1305867

43.363

90.642

0.393
  dprA Haemophilus influenzae Rd KW20

43.62

90.107

0.393

Multiple sequence alignment