Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CVS48_RS15165 Genome accession   NZ_CP025030
Coordinates   3340586..3342118 (+) Length   510 a.a.
NCBI ID   WP_100855157.1    Uniprot ID   -
Organism   Achromobacter spanius strain DSM 23806     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3335586..3347118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVS48_RS15145 (CVS48_15145) ptsP 3335751..3337628 (+) 1878 WP_279629465.1 phosphoenolpyruvate--protein phosphotransferase -
  CVS48_RS15150 (CVS48_15150) amt 3337797..3339035 (-) 1239 WP_100855155.1 ammonium transporter -
  CVS48_RS15155 (CVS48_15155) - 3339068..3339406 (-) 339 WP_006218735.1 P-II family nitrogen regulator -
  CVS48_RS15160 (CVS48_15160) - 3340169..3340420 (+) 252 WP_100855156.1 accessory factor UbiK family protein -
  CVS48_RS15165 (CVS48_15165) comM 3340586..3342118 (+) 1533 WP_100855157.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CVS48_RS15170 (CVS48_15170) rpmI 3342501..3342698 (+) 198 WP_006218740.1 50S ribosomal protein L35 -
  CVS48_RS15175 (CVS48_15175) rplT 3342714..3343073 (+) 360 WP_100855158.1 50S ribosomal protein L20 -
  CVS48_RS15180 (CVS48_15180) pheS 3343151..3344173 (+) 1023 WP_006218742.1 phenylalanine--tRNA ligase subunit alpha -
  CVS48_RS15185 (CVS48_15185) pheT 3344187..3346604 (+) 2418 WP_100855159.1 phenylalanine--tRNA ligase subunit beta -
  CVS48_RS15190 (CVS48_15190) - 3346608..3346949 (+) 342 WP_006218744.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 52958.10 Da        Isoelectric Point: 8.7080

>NTDB_id=257470 CVS48_RS15165 WP_100855157.1 3340586..3342118(+) (comM) [Achromobacter spanius strain DSM 23806]
MTLAVLASRALSGMHAHAVRVETHLGPGLPSFNVVGLADTEVRESRERVRAAILNSGFDFPSGRITVNLSPADIPKESGR
FDLPIALGLLLASGQLAAPADGDVAGKLPASDPSLADLVFAGELSLTGALVPVAAPLVIALSVARDAPGATLILPAGSAE
EAAWVPGLRVLSARSLADVAAHAAGAQLLPDAIPKAWPQAPPGPCLSDVRGQAVARRALEVAAAGGHSLLMVGPPGAGKS
MLAARLPGLLPPLSRSQALEAAAVAALAGLPQTLMGEPPFRAPHHSASVAALVGGGSRPRPGEISLAHNGVLFLDELPEY
SRRTLEALREPLEAGRVVIARALHAAQFPARFQLIAAMNPCPCGWRGHPVRACVCRPDQVARYVGKISGPLLDRIDLHVA
LPPSDPESMAGPAGEASSHVSERVRRCRQRQHDRQGKLNAALSGAELDQYCMMQADAQALLFQAMRRLSGSGRALHRALR
VARTVADLEGADVLGACHVAQAVQYRRPGL

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=257470 CVS48_RS15165 WP_100855157.1 3340586..3342118(+) (comM) [Achromobacter spanius strain DSM 23806]
TTGACGCTTGCCGTACTTGCCAGCCGCGCGCTTAGCGGCATGCATGCGCACGCCGTCCGGGTCGAAACCCATTTGGGCCC
TGGGCTGCCCAGCTTCAACGTCGTGGGGCTTGCCGACACGGAAGTGCGCGAAAGCCGCGAGCGCGTGCGTGCCGCGATTC
TGAACAGCGGATTCGATTTTCCTTCCGGACGAATCACGGTCAATTTGTCGCCGGCCGACATCCCCAAGGAATCGGGGCGA
TTTGATCTGCCCATCGCATTGGGCTTGCTGCTGGCGTCGGGCCAACTGGCCGCGCCCGCCGACGGCGACGTGGCGGGCAA
ACTGCCTGCGTCTGATCCGTCGCTGGCGGATCTGGTGTTTGCGGGCGAGCTATCCCTGACGGGCGCGTTGGTGCCGGTTG
CGGCACCATTGGTCATTGCGTTGAGCGTGGCCCGCGATGCCCCCGGCGCTACGTTGATTTTGCCGGCGGGCAGTGCCGAA
GAGGCTGCCTGGGTGCCGGGCTTGCGTGTCTTGTCGGCGCGCAGTTTGGCCGATGTCGCCGCGCATGCCGCGGGCGCGCA
ATTGCTGCCCGACGCCATCCCGAAGGCATGGCCGCAAGCGCCACCCGGGCCGTGTCTGTCGGATGTACGAGGGCAGGCAG
TCGCCCGGCGGGCGTTGGAAGTCGCCGCTGCGGGCGGGCACAGTTTGCTGATGGTAGGCCCGCCGGGGGCAGGTAAAAGC
ATGCTGGCGGCGCGTTTGCCGGGGCTGCTGCCGCCATTGAGCCGGTCGCAGGCGCTTGAGGCGGCGGCTGTCGCCGCCTT
GGCGGGCTTGCCGCAGACCCTGATGGGCGAGCCGCCATTTCGCGCGCCGCACCATTCCGCCTCCGTTGCCGCCCTGGTGG
GAGGCGGCAGCCGGCCACGCCCCGGCGAGATCAGCCTGGCGCACAATGGCGTGCTGTTCCTGGACGAATTGCCCGAGTAC
AGCCGTCGTACCCTGGAGGCGCTGCGCGAGCCCCTGGAGGCGGGCAGGGTGGTTATCGCCCGGGCATTGCACGCCGCGCA
GTTTCCGGCGCGGTTTCAACTGATCGCCGCGATGAATCCCTGCCCATGCGGTTGGCGCGGGCACCCCGTGCGGGCCTGCG
TGTGCCGGCCGGACCAGGTTGCTCGTTATGTAGGCAAGATATCGGGGCCACTACTGGACCGTATCGATCTGCATGTCGCG
CTGCCGCCGTCGGATCCGGAGTCGATGGCGGGGCCAGCGGGAGAAGCCTCAAGCCATGTCTCCGAGCGTGTGCGGCGATG
TCGTCAGCGTCAGCACGACCGCCAGGGTAAGCTGAACGCCGCATTGAGCGGCGCGGAGCTTGATCAGTACTGCATGATGC
AGGCAGACGCCCAGGCGTTGCTGTTTCAGGCCATGCGTCGTCTGTCCGGATCCGGCCGAGCCTTGCACCGAGCATTGCGG
GTTGCCCGTACGGTCGCCGATCTGGAGGGGGCGGACGTGCTGGGCGCCTGCCATGTCGCGCAGGCGGTCCAGTACCGCCG
GCCGGGTTTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-156)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(206-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

47.573

100

0.48
  comM Vibrio campbellii strain DS40M4

47.184

100

0.476
  comM Haemophilus influenzae Rd KW20

45.349

100

0.459
  comM Glaesserella parasuis strain SC1401

44.402

100

0.451
  comM Legionella pneumophila str. Paris

43.954

100

0.449
  comM Legionella pneumophila strain ERS1305867

43.954

100

0.449
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

39.808

100

0.406

Multiple sequence alignment