Detailed information NTG0257316

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: CWQ22_RS01060
• Genome accession: NZ_CP025027
• Coordinates: 175430..175843 (+)
• Length: 137 a.a.
• NCBI ID: WP_100880998.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SGEHI2015-107
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 170430..180843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWQ22_RS01035 (CWQ22_01035)	-	172683..173048 (+)	366	WP_000285373.1	DUF1033 family protein	-
CWQ22_RS01045 (CWQ22_01045)	comYA	173221..174192 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
CWQ22_RS01050 (CWQ22_01050)	comYB	174086..175129 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
CWQ22_RS01055 (CWQ22_01055)	comGC/cglC	175126..175455 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
CWQ22_RS01060 (CWQ22_01060)	comYD	175430..175843 (+)	414	WP_100880998.1	competence type IV pilus minor pilin ComGD	Machinery gene
CWQ22_RS01065 (CWQ22_01065)	comGE	175815..176114 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
CWQ22_RS01070 (CWQ22_01070)	comGF	176068..176529 (+)	462	WP_001874812.1	competence type IV pilus minor pilin ComGF	-
CWQ22_RS01075 (CWQ22_01075)	comGG	176507..176878 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
CWQ22_RS01080 (CWQ22_01080)	comYH	176993..177967 (+)	975	WP_001008574.1	N-6 DNA methylase	Machinery gene
CWQ22_RS01085 (CWQ22_01085)	-	177999..179192 (+)	1194	WP_000047534.1	acetate kinase	-
CWQ22_RS01090 (CWQ22_01090)	-	179344..179550 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
CWQ22_RS01095 (CWQ22_01095)	-	179609..179746 (+)	138	WP_001865900.1	hypothetical protein	-
CWQ22_RS01100 (CWQ22_01100)	-	179787..180242 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15991.47 Da
• Isoelectric Point: 9.9787

>NTDB_id=257316 CWQ22_RS01060 WP_100880998.1 175430..175843(+) (comYD) [Streptococcus agalactiae strain SGEHI2015-107]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGHSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=257316 CWQ22_RS01060 WP_100880998.1 175430..175843(+) (comYD) [Streptococcus agalactiae strain SGEHI2015-107]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGCATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	50.758	96.35	0.489
comYD	Streptococcus mutans UA159	50.758	96.35	0.489
comYD	Streptococcus gordonii str. Challis substr. CH1	46.667	98.54	0.46
comGD/cglD	Streptococcus mitis NCTC 12261	40.299	97.81	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	42.52	92.701	0.394
comGD/cglD	Streptococcus mitis SK321	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae Rx1	41.732	92.701	0.387
comGD/cglD	Streptococcus pneumoniae D39	41.732	92.701	0.387
comGD/cglD	Streptococcus pneumoniae R6	41.732	92.701	0.387