Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CSAL_RS02295 Genome accession   NC_007963
Coordinates   497669..498235 (+) Length   188 a.a.
NCBI ID   WP_011505758.1    Uniprot ID   Q1R0E6
Organism   Chromohalobacter israelensis DSM 3043     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 492669..503235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSAL_RS02285 (Csal_0448) uvrA 493135..496008 (-) 2874 WP_011505756.1 excinuclease ABC subunit UvrA -
  CSAL_RS02290 (Csal_0449) - 496253..497635 (+) 1383 WP_011505757.1 MFS transporter -
  CSAL_RS02295 (Csal_0450) ssb 497669..498235 (+) 567 WP_011505758.1 single-stranded DNA-binding protein Machinery gene
  CSAL_RS02300 (Csal_0451) norR 498245..499813 (-) 1569 WP_011505759.1 nitric oxide reductase transcriptional regulator NorR -
  CSAL_RS02305 (Csal_0452) hmpA 500065..501246 (+) 1182 WP_011505760.1 NO-inducible flavohemoprotein -
  CSAL_RS02310 (Csal_0453) - 501308..502177 (-) 870 WP_011505761.1 SMP-30/gluconolactonase/LRE family protein -
  CSAL_RS02315 (Csal_0454) - 502331..503203 (+) 873 WP_043558899.1 sugar nucleotide-binding protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20699.68 Da        Isoelectric Point: 4.9362

>NTDB_id=25730 CSAL_RS02295 WP_011505758.1 497669..498235(+) (ssb) [Chromohalobacter israelensis DSM 3043]
MARGVNKVILIGNLGQDPEVRFLPSGNPVCNLRIATTDSWTDRQSGQRQERTEWHTVVMFNKLAEIAQQYVKKGSRIYIE
GRLQTRKWQGQDGQDRYSTEIVANDMQMLDSRSGQGGDYAQPSQGAPQQGMGQPGGAPQQGGGYGQPQGGPPPQQRPQQQ
PPQQGGQQDNYGAPNPGNFDDFDDEIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=25730 CSAL_RS02295 WP_011505758.1 497669..498235(+) (ssb) [Chromohalobacter israelensis DSM 3043]
ATGGCTCGCGGCGTCAACAAGGTCATTCTGATCGGCAACCTCGGTCAGGACCCGGAAGTTCGCTTTCTTCCCTCCGGCAA
CCCGGTATGCAATCTGCGTATCGCGACCACCGACTCGTGGACCGACCGCCAGAGCGGTCAGCGTCAGGAGCGTACCGAAT
GGCACACGGTGGTGATGTTCAACAAGCTGGCGGAAATCGCCCAGCAGTACGTGAAGAAAGGCTCGCGCATCTATATCGAA
GGCCGCCTGCAGACGCGCAAGTGGCAGGGGCAGGACGGTCAGGATCGCTATTCCACCGAAATCGTCGCCAATGACATGCA
GATGCTCGATTCGCGCAGTGGACAGGGAGGCGACTACGCCCAGCCCTCGCAAGGCGCGCCTCAGCAAGGCATGGGCCAGC
CCGGTGGCGCGCCCCAGCAGGGAGGCGGCTACGGTCAGCCTCAGGGCGGTCCGCCGCCGCAGCAGCGTCCCCAGCAGCAG
CCGCCGCAACAGGGCGGGCAGCAGGACAATTATGGCGCTCCCAATCCGGGCAACTTCGATGACTTTGACGACGAGATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1R0E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.403

100

0.543
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.473
  ssb Neisseria meningitidis MC58

47.849

98.936

0.473
  ssb Neisseria gonorrhoeae MS11

47.568

98.404

0.468

Multiple sequence alignment