Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SDEN_RS17765 Genome accession   NC_007954
Coordinates   4082799..4084319 (+) Length   506 a.a.
NCBI ID   WP_011497838.1    Uniprot ID   Q12IN0
Organism   Shewanella denitrificans OS217     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4077799..4089319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEN_RS20895 (Sden_3418) - 4079478..4079768 (-) 291 WP_011497835.1 hypothetical protein -
  SDEN_RS17755 (Sden_3419) - 4079765..4080949 (-) 1185 WP_011497836.1 KAP family P-loop NTPase fold protein -
  SDEN_RS17760 (Sden_3420) - 4081055..4082275 (-) 1221 WP_011497837.1 hypothetical protein -
  SDEN_RS17765 (Sden_3421) comM 4082799..4084319 (+) 1521 WP_011497838.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SDEN_RS17770 (Sden_3422) - 4084396..4085295 (+) 900 WP_011497839.1 acyltransferase -
  SDEN_RS17775 (Sden_3423) - 4085301..4086242 (+) 942 WP_011497840.1 acyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54758.38 Da        Isoelectric Point: 8.4161

>NTDB_id=25723 SDEN_RS17765 WP_011497838.1 4082799..4084319(+) (comM) [Shewanella denitrificans OS217]
MAIACVMTRASCGVQAPKVIVEVHLSNGLPGFSLVGLPEASVKEAKERVRSALINAGFEFPMQRITVNLAPADLPKQGGR
YDLPIAIGILAASEQIPKKAIADAEFVGELALTGQVRPCVGLLPAIIAARDDGHPMFMPLDNRHEAELVGYQQCHFVADL
QHLAAFIHGQGQLPKVDNQTQWITESAVDPKLCLSDVIGQYQAKQGLEIAAAGGHNLLLMGPPGTGKSMLASRIIPLLPN
LSYQEAIEVAAIHSVAGLNTPSHNFLQRPFRSPHHTCSAISLVGGGSVPKPGEISLAHRGILFLDELPEFPRRVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGNVDKARSTPDQIQRYLSRLSGPFLDRFDLTVDVPKLPSGALSQANI
QAETSISVAARVRKAREKQLERSGVLNNELSPKALKKVANLDQANLIFLEQSVQLLGLSVRSFHKIQRVACTIADLQEEA
KVDRAHLAQALGYRAMDRLIARLRQQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=25723 SDEN_RS17765 WP_011497838.1 4082799..4084319(+) (comM) [Shewanella denitrificans OS217]
ATGGCAATTGCATGTGTCATGACTCGTGCAAGCTGTGGCGTACAAGCCCCTAAAGTCATAGTGGAAGTGCATTTAAGCAA
TGGCCTGCCGGGCTTTAGCTTAGTGGGTTTGCCTGAGGCTTCGGTAAAAGAGGCCAAAGAAAGGGTGCGCAGTGCGCTAA
TTAATGCAGGGTTTGAATTCCCGATGCAGCGCATCACAGTAAATTTAGCCCCAGCAGATTTACCTAAGCAAGGGGGGCGC
TACGATTTACCCATCGCCATTGGGATCCTTGCCGCCTCCGAGCAAATTCCCAAGAAAGCCATTGCGGATGCTGAGTTTGT
CGGTGAATTAGCACTAACCGGTCAAGTTCGCCCCTGTGTGGGCCTGCTGCCTGCCATCATAGCCGCGAGGGATGATGGCC
ATCCTATGTTTATGCCGCTGGATAATCGCCATGAAGCCGAATTAGTGGGTTACCAGCAATGCCATTTCGTTGCCGATTTA
CAGCATCTAGCGGCCTTTATACATGGCCAAGGCCAACTGCCTAAGGTCGATAATCAGACCCAATGGATAACTGAGTCAGC
TGTCGACCCCAAACTTTGCCTAAGTGATGTCATCGGCCAATATCAGGCCAAACAAGGCTTAGAAATTGCCGCCGCTGGCG
GGCATAACCTATTACTTATGGGACCGCCTGGGACGGGAAAGAGTATGTTAGCGAGTCGCATTATCCCTCTACTGCCCAAC
TTGAGCTATCAAGAAGCGATAGAAGTGGCGGCAATACATTCTGTCGCTGGGCTGAACACTCCAAGCCACAATTTTCTGCA
GCGCCCCTTTCGCTCGCCTCATCATACCTGTTCGGCCATCTCTTTGGTGGGTGGCGGCAGTGTGCCTAAGCCTGGGGAGA
TTTCATTGGCCCACAGGGGTATTTTATTTCTCGATGAATTGCCTGAGTTCCCCCGCAGGGTATTAGATTGTCTGCGTGAA
CCCATGGAAACTGGTGAAGTGGTGATATCAAGGGCGGCAGCCAAGCTCACCTTTGCCAGCCGCTTTCAATTGATTGCCGC
CATGAACCCAAGCCCTTGTGGTAATGTTGATAAAGCCCGCTCGACGCCAGATCAAATTCAGCGTTACCTTTCGCGGCTAT
CTGGGCCATTTTTGGATAGGTTCGATCTCACCGTAGATGTGCCTAAACTCCCAAGCGGCGCCTTGAGTCAAGCGAACATA
CAAGCCGAAACCAGTATCAGCGTCGCCGCCAGAGTGAGAAAGGCGAGAGAAAAACAACTTGAACGCTCTGGGGTACTCAA
TAATGAACTTAGTCCAAAAGCACTGAAAAAAGTGGCTAATCTTGACCAAGCTAACCTCATTTTTCTTGAGCAAAGCGTGC
AACTTTTAGGGCTTTCAGTACGCAGTTTTCATAAAATTCAGCGGGTGGCTTGCACCATTGCCGATCTGCAAGAAGAAGCT
AAGGTCGACAGGGCGCATCTGGCCCAAGCCCTAGGATATCGGGCCATGGACAGGTTAATCGCTCGTCTTAGACAGCAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q12IN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.403

100

0.557
  comM Vibrio cholerae strain A1552

53.543

100

0.538
  comM Vibrio campbellii strain DS40M4

52.849

100

0.532
  comM Glaesserella parasuis strain SC1401

53.057

100

0.532
  comM Legionella pneumophila str. Paris

46.693

98.617

0.46
  comM Legionella pneumophila strain ERS1305867

46.693

98.617

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.056

99.605

0.429

Multiple sequence alignment