Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CVS35_RS18520 Genome accession   NZ_CP024956
Coordinates   4082138..4082701 (+) Length   187 a.a.
NCBI ID   WP_011095190.1    Uniprot ID   -
Organism   Pectobacterium atrosepticum strain 36A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4077138..4087701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVS35_RS18500 (CVS35_18555) - 4077144..4077545 (-) 402 WP_207193853.1 type II toxin-antitoxin system VapC family toxin -
  CVS35_RS18505 (CVS35_18560) vapB 4077557..4077784 (-) 228 WP_011095187.1 type II toxin-antitoxin system VapB family antitoxin -
  CVS35_RS18510 (CVS35_18565) - 4078621..4079040 (-) 420 WP_011095188.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CVS35_RS18515 (CVS35_18570) uvrA 4079058..4081892 (-) 2835 WP_039296673.1 excinuclease ABC subunit UvrA -
  CVS35_RS18520 (CVS35_18575) ssb 4082138..4082701 (+) 564 WP_011095190.1 single-stranded DNA-binding protein Machinery gene
  CVS35_RS18525 (CVS35_18580) - 4082947..4084803 (+) 1857 WP_039293548.1 amidohydrolase -
  CVS35_RS18530 (CVS35_18585) - 4084998..4085453 (+) 456 WP_011095192.1 GNAT family N-acetyltransferase -
  CVS35_RS18535 (CVS35_18590) - 4085705..4086136 (-) 432 WP_011095193.1 carboxymuconolactone decarboxylase family protein -
  CVS35_RS18540 (CVS35_18595) - 4086277..4086708 (-) 432 WP_039293554.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19726.69 Da        Isoelectric Point: 5.2456

>NTDB_id=256775 CVS35_RS18520 WP_011095190.1 4082138..4082701(+) (ssb) [Pectobacterium atrosepticum strain 36A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQPQGGWGQPQQPQGGNQFSGGAQAQQRPA
QNASSSQNNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=256775 CVS35_RS18520 WP_011095190.1 4082138..4082701(+) (ssb) [Pectobacterium atrosepticum strain 36A]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTTGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTAGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCCAC
AAGGCGGCTGGGGTCAACCTCAGCAACCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCAGCT
CAGAACGCATCTTCCTCACAAAATAATGCCCCGGCACAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCTTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.429

100

0.722
  ssb Glaesserella parasuis strain SC1401

55.208

100

0.567
  ssb Neisseria meningitidis MC58

44.974

100

0.455
  ssb Neisseria gonorrhoeae MS11

44.974

100

0.455
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.158

97.861

0.364

Multiple sequence alignment