Detailed information NTG0256582

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CV728_RS07670
• Genome accession: NZ_CP024948
• Coordinates: 1576846..1577829 (-)
• Length: 327 a.a.
• NCBI ID: WP_145818070.1
• Uniprot ID: A0A518YGY2
• Organism: Helicobacter pylori strain B140
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1571846..1582829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV728_RS07650 (CV728_07670)	-	1572103..1573041 (-)	939	WP_145818066.1	GDP-L-fucose synthase	-
CV728_RS07655 (CV728_07675)	gmd	1573034..1574179 (-)	1146	WP_145818067.1	GDP-mannose 4,6-dehydratase	-
CV728_RS07660 (CV728_07680)	-	1574234..1575646 (-)	1413	WP_145818068.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CV728_RS07665 (CV728_07685)	comB10	1575717..1576853 (-)	1137	WP_145818069.1	DNA type IV secretion system protein ComB10	Machinery gene
CV728_RS07670 (CV728_07690)	comB9	1576846..1577829 (-)	984	WP_145818070.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CV728_RS07675 (CV728_07695)	comB8	1577829..1578572 (-)	744	WP_128036478.1	virB8 family protein	Machinery gene
CV728_RS07680 (CV728_07700)	comB7	1578569..1578682 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
CV728_RS07685 (CV728_07705)	comB6	1578698..1579753 (-)	1056	WP_145818311.1	P-type conjugative transfer protein TrbL	Machinery gene
CV728_RS07690 (CV728_07710)	-	1579761..1580765 (-)	1005	WP_145818313.1	PDZ domain-containing protein	-
CV728_RS07695 (CV728_07715)	-	1580765..1581067 (-)	303	WP_145818071.1	YbaB/EbfC family nucleoid-associated protein	-
CV728_RS07700 (CV728_07720)	panD	1581070..1581423 (-)	354	WP_145818072.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37887.56 Da
• Isoelectric Point: 9.2073

>NTDB_id=256582 CV728_RS07670 WP_145818070.1 1576846..1577829(-) (comB9) [Helicobacter pylori strain B140]
MRKFLYALMGFLLAFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPTNNKPLKEEPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRF
VKRARDE

Nucleotide

• Length: 984 bp

>NTDB_id=256582 CV728_RS07670 WP_145818070.1 1576846..1577829(-) (comB9) [Helicobacter pylori strain B140]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACTTTGAATATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAGCCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TCTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTAACG
CCATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGG
ATTTGTTCTAAAAAATCAAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGA
CAAAAGATTAGCGCTCTCTAAATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGTTGGGTAAGGACTATTTGTGCATCCGTTTT
GTCAAAAGGGCTAGAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

3D structure

• AlphaFold DB: A0A518YGY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.958	100	0.951