Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | CV728_RS07665 | Genome accession | NZ_CP024948 |
| Coordinates | 1575717..1576853 (-) | Length | 378 a.a. |
| NCBI ID | WP_145818069.1 | Uniprot ID | A0A518YGX9 |
| Organism | Helicobacter pylori strain B140 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1570717..1581853
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV728_RS07645 (CV728_07665) | hypE | 1570800..1571798 (+) | 999 | WP_145818064.1 | hydrogenase expression/formation protein HypE | - |
| CV728_RS07650 (CV728_07670) | - | 1572103..1573041 (-) | 939 | WP_145818066.1 | GDP-L-fucose synthase | - |
| CV728_RS07655 (CV728_07675) | gmd | 1573034..1574179 (-) | 1146 | WP_145818067.1 | GDP-mannose 4,6-dehydratase | - |
| CV728_RS07660 (CV728_07680) | - | 1574234..1575646 (-) | 1413 | WP_145818068.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| CV728_RS07665 (CV728_07685) | comB10 | 1575717..1576853 (-) | 1137 | WP_145818069.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CV728_RS07670 (CV728_07690) | comB9 | 1576846..1577829 (-) | 984 | WP_145818070.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CV728_RS07675 (CV728_07695) | comB8 | 1577829..1578572 (-) | 744 | WP_128036478.1 | virB8 family protein | Machinery gene |
| CV728_RS07680 (CV728_07700) | comB7 | 1578569..1578682 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| CV728_RS07685 (CV728_07705) | comB6 | 1578698..1579753 (-) | 1056 | WP_145818311.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CV728_RS07690 (CV728_07710) | - | 1579761..1580765 (-) | 1005 | WP_145818313.1 | PDZ domain-containing protein | - |
| CV728_RS07695 (CV728_07715) | - | 1580765..1581067 (-) | 303 | WP_145818071.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CV728_RS07700 (CV728_07720) | panD | 1581070..1581423 (-) | 354 | WP_145818072.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42302.01 Da Isoelectric Point: 9.9637
>NTDB_id=256581 CV728_RS07665 WP_145818069.1 1575717..1576853(-) (comB10) [Helicobacter pylori strain B140]
MNKWLKGVLIFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEMKYPLQDYTFTQNPQPINTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRSNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGVLIFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEMKYPLQDYTFTQNPQPINTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRSNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=256581 CV728_RS07665 WP_145818069.1 1575717..1576853(-) (comB10) [Helicobacter pylori strain B140]
ATGAATAAGTGGCTTAAGGGGGTGCTTATTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGATGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAATCAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAATACAACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCACAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCAGCTTTAAACAACAGGAGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAAGGGAGTAGGGTTTTCATTTCGCCTAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGTGCTTATTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGATGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAATCAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAATACAACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCACAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCAGCTTTAAACAACAGGAGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAAGGGAGTAGGGTTTTCATTTCGCCTAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.09 |
100 |
0.971 |