Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | CV729_RS01225 | Genome accession | NZ_CP024947 |
| Coordinates | 242730..243866 (+) | Length | 378 a.a. |
| NCBI ID | WP_145731666.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain J182 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 237730..248866
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV729_RS01190 (CV729_01185) | panD | 238176..238526 (+) | 351 | WP_108593697.1 | aspartate 1-decarboxylase | - |
| CV729_RS01195 (CV729_01190) | - | 238537..238830 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CV729_RS01200 (CV729_01195) | - | 238830..239825 (+) | 996 | WP_145731660.1 | PDZ domain-containing protein | - |
| CV729_RS01205 (CV729_01200) | comB6 | 239833..240888 (+) | 1056 | WP_145731661.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CV729_RS01210 (CV729_01205) | comB7 | 240904..241017 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| CV729_RS01215 (CV729_01210) | comB8 | 241014..241751 (+) | 738 | WP_145731663.1 | virB8 family protein | Machinery gene |
| CV729_RS01220 (CV729_01215) | comB9 | 241751..242737 (+) | 987 | WP_145731664.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CV729_RS01225 (CV729_01220) | comB10 | 242730..243866 (+) | 1137 | WP_145731666.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CV729_RS01230 (CV729_01225) | - | 243936..245348 (+) | 1413 | WP_145731668.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| CV729_RS01235 (CV729_01230) | gmd | 245377..246522 (+) | 1146 | WP_145731670.1 | GDP-mannose 4,6-dehydratase | - |
| CV729_RS01240 (CV729_01235) | - | 246515..247447 (+) | 933 | WP_145731672.1 | GDP-L-fucose synthase | - |
| CV729_RS08275 (CV729_01240) | - | 247761..248030 (-) | 270 | WP_145731674.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42127.67 Da Isoelectric Point: 9.8543
>NTDB_id=256557 CV729_RS01225 WP_145731666.1 242730..243866(+) (comB10) [Helicobacter pylori strain J182]
MNKWLKGALVFVGGFATIVTISLIYHQKSKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTSPPMDPKTNTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIVEFLK
MNKWLKGALVFVGGFATIVTISLIYHQKSKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTSPPMDPKTNTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIVEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=256557 CV729_RS01225 WP_145731666.1 242730..243866(+) (comB10) [Helicobacter pylori strain J182]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCATCA
AAAGTCAAAAGCCCCCTTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCCAAAGAAGAAACTTTTACCAGCCCTCCCATGGATCCAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAACTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGTATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAGGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATTTTTTTCCCTATACCAAAAGAGAATGAAGTCATCG
TTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCATCA
AAAGTCAAAAGCCCCCTTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCCAAAGAAGAAACTTTTACCAGCCCTCCCATGGATCCAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAACTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGTATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAGGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATTTTTTTCCCTATACCAAAAGAGAATGAAGTCATCG
TTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |