Detailed information NTG0256556

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CV729_RS01220
• Genome accession: NZ_CP024947
• Coordinates: 241751..242737 (+)
• Length: 328 a.a.
• NCBI ID: WP_145731664.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain J182
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 236751..247737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV729_RS01190 (CV729_01185)	panD	238176..238526 (+)	351	WP_108593697.1	aspartate 1-decarboxylase	-
CV729_RS01195 (CV729_01190)	-	238537..238830 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
CV729_RS01200 (CV729_01195)	-	238830..239825 (+)	996	WP_145731660.1	PDZ domain-containing protein	-
CV729_RS01205 (CV729_01200)	comB6	239833..240888 (+)	1056	WP_145731661.1	P-type conjugative transfer protein TrbL	Machinery gene
CV729_RS01210 (CV729_01205)	comB7	240904..241017 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
CV729_RS01215 (CV729_01210)	comB8	241014..241751 (+)	738	WP_145731663.1	virB8 family protein	Machinery gene
CV729_RS01220 (CV729_01215)	comB9	241751..242737 (+)	987	WP_145731664.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CV729_RS01225 (CV729_01220)	comB10	242730..243866 (+)	1137	WP_145731666.1	DNA type IV secretion system protein ComB10	Machinery gene
CV729_RS01230 (CV729_01225)	-	243936..245348 (+)	1413	WP_145731668.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CV729_RS01235 (CV729_01230)	gmd	245377..246522 (+)	1146	WP_145731670.1	GDP-mannose 4,6-dehydratase	-
CV729_RS01240 (CV729_01235)	-	246515..247447 (+)	933	WP_145731672.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37727.43 Da
• Isoelectric Point: 9.3370

>NTDB_id=256556 CV729_RS01220 WP_145731664.1 241751..242737(+) (comB9) [Helicobacter pylori strain J182]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENAPTNDNKPLKEEPLKVGKEEAKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCL
WACSKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKKGKDE

Nucleotide

• Length: 987 bp

>NTDB_id=256556 CV729_RS01220 WP_145731664.1 241751..242737(+) (comB9) [Helicobacter pylori strain J182]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCTAACACTTTGAACATTGATTACTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGAGATAAGGTGGGCTTTGACGCGAAAATTTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTATTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAACCGCAAAATAAAGAAAATGCCCTTGAAAATGCCCCCACAAACGACAACAAGCCCTT
AAAAGAAGAACCCTTAAAAGTAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAAACGATAACCATTGGCGATAATACTA
ACGCAATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTG
TGGGCTTGTTCTAAAAAATCCAAACTCTCTTTAATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATT
TGACAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGCATCCGT
TTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.598	100	0.936