Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | CV729_RS01205 | Genome accession | NZ_CP024947 |
| Coordinates | 239833..240888 (+) | Length | 351 a.a. |
| NCBI ID | WP_145731661.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain J182 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 234833..245888
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV729_RS01175 (CV729_01170) | - | 235250..235663 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| CV729_RS01180 (CV729_01175) | - | 235686..235961 (+) | 276 | WP_145731656.1 | ATP-dependent Clp protease adaptor ClpS | - |
| CV729_RS01185 (CV729_01180) | - | 235961..238186 (+) | 2226 | WP_145731658.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| CV729_RS01190 (CV729_01185) | panD | 238176..238526 (+) | 351 | WP_108593697.1 | aspartate 1-decarboxylase | - |
| CV729_RS01195 (CV729_01190) | - | 238537..238830 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CV729_RS01200 (CV729_01195) | - | 238830..239825 (+) | 996 | WP_145731660.1 | PDZ domain-containing protein | - |
| CV729_RS01205 (CV729_01200) | comB6 | 239833..240888 (+) | 1056 | WP_145731661.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CV729_RS01210 (CV729_01205) | comB7 | 240904..241017 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| CV729_RS01215 (CV729_01210) | comB8 | 241014..241751 (+) | 738 | WP_145731663.1 | virB8 family protein | Machinery gene |
| CV729_RS01220 (CV729_01215) | comB9 | 241751..242737 (+) | 987 | WP_145731664.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CV729_RS01225 (CV729_01220) | comB10 | 242730..243866 (+) | 1137 | WP_145731666.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CV729_RS01230 (CV729_01225) | - | 243936..245348 (+) | 1413 | WP_145731668.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39865.76 Da Isoelectric Point: 8.3278
>NTDB_id=256553 CV729_RS01205 WP_145731661.1 239833..240888(+) (comB6) [Helicobacter pylori strain J182]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALWFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSDHALSLDFIFNHGFYALSFISDLNHNEMSVWLFLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPTPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALWFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSDHALSLDFIFNHGFYALSFISDLNHNEMSVWLFLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPTPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=256553 CV729_RS01205 WP_145731661.1 239833..240888(+) (comB6) [Helicobacter pylori strain J182]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAGGAACAGAATTTCTTCAGCGCTAGCGCACTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTGACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAACCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTGGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTAATTCCTTACAATACATCA
CGACCCCACCCACTCCCTCTAGCGTTTCTTCTTCTATGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAGGAACAGAATTTCTTCAGCGCTAGCGCACTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTGACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAACCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTGGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTAATTCCTTACAATACATCA
CGACCCCACCCACTCCCTCTAGCGTTTCTTCTTCTATGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
98.291 |
100 |
0.983 |