Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CVS42_RS21265 Genome accession   NZ_CP024933
Coordinates   4570988..4572502 (+) Length   504 a.a.
NCBI ID   WP_100647101.1    Uniprot ID   -
Organism   Aeromonas veronii strain X12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4565988..4577502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVS42_RS21245 (CVS42_21255) - 4567725..4568669 (-) 945 WP_100647099.1 branched-chain amino acid transaminase -
  CVS42_RS21250 (CVS42_21260) ilvM 4568682..4568960 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  CVS42_RS21255 (CVS42_21265) ilvG 4568957..4570603 (-) 1647 WP_100647100.1 acetolactate synthase 2 catalytic subunit -
  CVS42_RS21265 (CVS42_21270) comM 4570988..4572502 (+) 1515 WP_100647101.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CVS42_RS21270 (CVS42_21275) - 4572629..4573528 (+) 900 WP_005339610.1 acyltransferase -
  CVS42_RS21275 (CVS42_21280) - 4573535..4574500 (+) 966 WP_100647102.1 acyltransferase -
  CVS42_RS21280 (CVS42_21285) - 4574425..4574931 (-) 507 WP_100647103.1 DUF523 domain-containing protein -
  CVS42_RS21285 (CVS42_21290) - 4574928..4575578 (-) 651 WP_005339607.1 NrtR DNA-binding winged helix domain-containing protein -
  CVS42_RS21290 (CVS42_21295) - 4575653..4576288 (+) 636 WP_005356142.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54579.47 Da        Isoelectric Point: 7.4493

>NTDB_id=256464 CVS42_RS21265 WP_100647101.1 4570988..4572502(+) (comM) [Aeromonas veronii strain X12]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=256464 CVS42_RS21265 WP_100647101.1 4570988..4572502(+) (comM) [Aeromonas veronii strain X12]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAAATTCGTCCCGTACTCGGGGTATTGCCTGCCGTACTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCGGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCAGTCACCGCCTGGCTGGCAGGACAATACGAACTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCAGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGCGCCTCAGCAGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGATCGGGTACTGGCGGCGCGAGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464

Multiple sequence alignment