Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CUJ87_RS01730 Genome accession   NZ_CP024905
Coordinates   380810..381361 (+) Length   183 a.a.
NCBI ID   WP_114196451.1    Uniprot ID   -
Organism   Paraburkholderia caledonica strain PHRS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 375810..386361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUJ87_RS01720 (CUJ87_01725) uvrA 376191..379064 (-) 2874 WP_114196450.1 excinuclease ABC subunit UvrA -
  CUJ87_RS01725 (CUJ87_01730) - 379448..380641 (+) 1194 WP_114197834.1 MFS transporter -
  CUJ87_RS01730 (CUJ87_01735) ssb 380810..381361 (+) 552 WP_114196451.1 single-stranded DNA-binding protein Machinery gene
  CUJ87_RS01735 (CUJ87_01740) - 381429..382229 (-) 801 WP_114196452.1 hypothetical protein -
  CUJ87_RS01740 (CUJ87_01745) - 382536..384188 (+) 1653 WP_114196453.1 methyl-accepting chemotaxis protein -
  CUJ87_RS01745 (CUJ87_01750) - 384306..385115 (-) 810 WP_087754756.1 c-type cytochrome -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18764.56 Da        Isoelectric Point: 5.3552

>NTDB_id=256355 CUJ87_RS01730 WP_114196451.1 380810..381361(+) (ssb) [Paraburkholderia caledonica strain PHRS4]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEMKEATEWHRVSFFGRLAEIVSEYLKKGSSVYLEG
RIRTRKWQAQDGTDRYSTEIVAEQMQMLGGRGGSMGGGDEGGYSRGEPSERSGGGGGGRAMSGGGSRGGSGGGGGGGAGS
GGSSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=256355 CUJ87_RS01730 WP_114196451.1 380810..381361(+) (ssb) [Paraburkholderia caledonica strain PHRS4]
ATGGCATCCGTGAACAAGGTCATTCTCGTCGGCAATCTCGGAGCCGATCCGGAAGTCCGTTATCTTCCGAGCGGCGACGC
AGTGGCGAATATCCGCCTTGCAACGACGGATCGGTACAAGGACAAGGCGTCCGGTGAAATGAAGGAAGCGACCGAATGGC
ACCGCGTGTCGTTCTTCGGCCGCCTCGCCGAGATCGTCTCCGAATACCTGAAGAAGGGCTCGTCGGTTTACCTCGAAGGG
CGCATTCGCACCCGTAAGTGGCAGGCGCAGGACGGCACCGACCGTTACTCGACGGAAATCGTTGCCGAGCAGATGCAAAT
GTTGGGCGGTCGTGGCGGCTCCATGGGCGGCGGCGACGAAGGCGGCTACAGCCGTGGCGAGCCGTCGGAGCGCAGCGGTG
GCGGTGGCGGCGGACGCGCTATGTCGGGTGGCGGTTCGCGCGGCGGCAGCGGTGGCGGTGGCGGTGGCGGCGCAGGCAGT
GGTGGCTCCAGCCGTCCGAGCGCACCGGCCGGCGGCGGCTTTGATGAGATGGATGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.469

100

0.519
  ssb Glaesserella parasuis strain SC1401

45.405

100

0.459
  ssb Neisseria gonorrhoeae MS11

41.53

100

0.415
  ssb Neisseria meningitidis MC58

41.758

99.454

0.415
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

98.361

0.366

Multiple sequence alignment