Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   CTW00_RS05050 Genome accession   NZ_CP024843
Coordinates   1024096..1026075 (+) Length   659 a.a.
NCBI ID   WP_003100861.1    Uniprot ID   A4GU89
Organism   Streptococcus iniae strain FP5228     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019096..1031075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTW00_RS05035 (CTW00_01018) - 1020061..1021172 (+) 1112 WP_089180045.1 IS3-like element IS981 family transposase -
  CTW00_RS05040 (CTW00_01019) pbp3 1021264..1022472 (-) 1209 WP_017794608.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  CTW00_RS05045 (CTW00_01020) pbp3 1022541..1023779 (-) 1239 WP_003100860.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  CTW00_RS05050 (CTW00_01021) amiA3 1024096..1026075 (+) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator
  CTW00_RS05055 (CTW00_01022) amiC 1026140..1027639 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  CTW00_RS05060 (CTW00_01023) amiD 1027639..1028565 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  CTW00_RS05065 (CTW00_01024) amiE 1028571..1029641 (+) 1071 WP_031239151.1 ABC transporter ATP-binding protein Regulator
  CTW00_RS05070 (CTW00_01025) amiF 1029634..1030557 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73178.72 Da        Isoelectric Point: 6.5305

>NTDB_id=255818 CTW00_RS05050 WP_003100861.1 1024096..1026075(+) (amiA3) [Streptococcus iniae strain FP5228]
MKKGKWLAVAGVTILSVSALAACGNNSSKASKGSTYSYVYTSDPDTLDYLVSGRSSTTEITQQGIDGLMEYDRFGNVIPS
LAKDWTVSKDGLTYTYKLRDDVKWYTADGEEYANVTAKDFVAGIKHAADKNSDALYLIQDSIKGLSDYVSGKNKDFSQVG
VKAVDKHTIQYTLNQPESYWNSKLTYGVLAPVNAEFLKSQGKNFGKASDAGSILYNGPFIITALTSKSSIEFVKNDHYWD
KKNVNVDAVQLTYYDGQDQESLFRNFDDGAYSVARLFPTTPSYKTAKKKYGESITYGQQNSTTYYATFNLNRTAYKHTKK
TDDKQKDDTKKAILNKDFRQALTFGFDRMSYQAQSAGQDAANKSLRNVLIPPTFVQINGEDFGKTVEKDLSAYGEQWKGI
NLADAQDGLYNPEKAKAQIAKAKTELEAQGVQFPIHIDFPQDQTATVLMQQAQSMKQSIEATLGKENVVIDILEVPTDTY
NNISYLAETPAQQDWDMSTASGWSPDFTDPSSYLDIFNPNLENAQTKFIGIEPLKNSDVVTAAGLDEFTQLVTDAGKITD
DQTKRYEAYAKAQAALTDSAVYIPTISLGGTPTVSKLVPFSGAFGWAGNKSNNLYYKYIKLQDKPVTAKQYAKALDKWKK
EKEKSNKKYADSLEKHIEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=255818 CTW00_RS05050 WP_003100861.1 1024096..1026075(+) (amiA3) [Streptococcus iniae strain FP5228]
ATGAAAAAAGGGAAATGGCTTGCGGTGGCAGGTGTCACTATTTTATCGGTCTCTGCCTTAGCGGCTTGCGGAAACAACTC
AAGTAAAGCGAGCAAAGGATCTACTTATAGTTATGTTTATACAAGTGACCCAGATACGTTGGATTACTTAGTATCTGGTC
GTTCATCAACAACTGAAATCACCCAACAAGGGATTGATGGCTTGATGGAGTATGATCGTTTTGGAAATGTTATTCCTTCA
CTTGCTAAAGATTGGACAGTTTCAAAAGATGGTCTGACTTATACTTATAAACTGCGTGATGATGTCAAATGGTATACAGC
TGATGGCGAAGAATATGCAAATGTTACTGCAAAGGACTTTGTGGCTGGAATCAAACATGCGGCAGATAAAAACTCAGACG
CCCTTTACCTCATCCAAGATTCAATCAAAGGCTTATCCGACTATGTCAGTGGTAAGAACAAAGACTTCTCACAAGTAGGT
GTTAAGGCTGTTGATAAGCATACCATTCAATACACTTTAAACCAACCCGAATCTTATTGGAATTCTAAGTTGACCTACGG
CGTTTTGGCACCTGTAAATGCAGAGTTCTTGAAATCACAAGGTAAAAACTTTGGTAAAGCATCAGATGCAGGTTCAATCC
TTTACAATGGACCATTTATCATCACTGCTCTAACAAGTAAATCATCAATTGAATTTGTTAAAAATGATCATTATTGGGAC
AAGAAAAATGTTAACGTTGACGCTGTTCAATTAACTTACTACGATGGTCAAGACCAAGAATCACTCTTTAGAAACTTTGA
CGATGGTGCTTATTCAGTCGCACGGTTGTTCCCAACAACGCCATCTTACAAGACTGCTAAGAAAAAATATGGTGAAAGCA
TTACTTATGGTCAACAAAATTCAACGACCTATTATGCAACGTTTAATTTAAACCGTACAGCCTACAAACATACAAAGAAA
ACTGACGATAAACAAAAAGATGATACTAAAAAAGCCATCCTAAACAAAGATTTCCGTCAAGCTTTAACCTTTGGTTTTGA
TAGAATGTCTTACCAAGCACAATCTGCTGGGCAAGATGCTGCTAACAAATCATTGAGAAATGTTTTGATACCGCCTACTT
TTGTTCAAATTAATGGTGAAGATTTTGGGAAGACCGTTGAAAAGGATTTATCGGCTTATGGGGAGCAATGGAAAGGCATT
AATTTAGCAGATGCCCAAGATGGCCTTTATAACCCAGAAAAAGCAAAAGCGCAAATAGCAAAAGCAAAAACTGAATTGGA
AGCTCAAGGTGTTCAATTCCCAATTCACATCGACTTCCCACAAGACCAAACAGCAACAGTCTTGATGCAACAAGCCCAAT
CAATGAAACAATCTATTGAAGCAACATTAGGTAAAGAAAATGTTGTTATTGATATTCTTGAAGTTCCAACAGATACTTAC
AATAACATTTCATATTTAGCTGAAACACCAGCTCAACAGGATTGGGACATGTCAACAGCATCTGGTTGGAGTCCGGACTT
TACTGATCCCTCATCATATCTTGACATCTTTAATCCAAATCTTGAAAATGCGCAAACCAAGTTTATTGGTATTGAACCAT
TGAAAAATTCAGATGTTGTTACAGCGGCAGGTTTAGATGAGTTTACACAGTTAGTTACTGATGCAGGTAAAATCACTGAT
GATCAAACAAAACGTTACGAAGCTTATGCAAAAGCGCAAGCAGCACTTACAGATTCAGCAGTTTATATTCCAACAATCAG
TCTAGGTGGAACTCCAACGGTTTCAAAACTTGTTCCATTTAGTGGAGCCTTTGGTTGGGCAGGAAATAAATCTAATAATC
TTTATTACAAATATATTAAATTACAGGATAAACCTGTTACTGCCAAACAATATGCTAAAGCTTTAGACAAATGGAAAAAA
GAAAAAGAAAAATCAAATAAAAAATATGCGGATTCCCTTGAAAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4GU89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

53.182

100

0.533
  amiA3 Streptococcus thermophilus LMD-9

53.03

100

0.531
  amiA Streptococcus salivarius strain HSISS4

52.656

100

0.527

Multiple sequence alignment