Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   CTW00_RS05055 Genome accession   NZ_CP024843
Coordinates   1026140..1027639 (+) Length   499 a.a.
NCBI ID   WP_003100862.1    Uniprot ID   A0A3L8GP27
Organism   Streptococcus iniae strain FP5228     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1021140..1032639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTW00_RS05040 (CTW00_01019) pbp3 1021264..1022472 (-) 1209 WP_017794608.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  CTW00_RS05045 (CTW00_01020) pbp3 1022541..1023779 (-) 1239 WP_003100860.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  CTW00_RS05050 (CTW00_01021) amiA3 1024096..1026075 (+) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator
  CTW00_RS05055 (CTW00_01022) amiC 1026140..1027639 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  CTW00_RS05060 (CTW00_01023) amiD 1027639..1028565 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  CTW00_RS05065 (CTW00_01024) amiE 1028571..1029641 (+) 1071 WP_031239151.1 ABC transporter ATP-binding protein Regulator
  CTW00_RS05070 (CTW00_01025) amiF 1029634..1030557 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  CTW00_RS05075 (CTW00_01027) - 1031022..1032189 (-) 1168 Protein_945 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56076.58 Da        Isoelectric Point: 10.2606

>NTDB_id=255819 CTW00_RS05055 WP_003100862.1 1026140..1027639(+) (amiC) [Streptococcus iniae strain FP5228]
MKKYIVERLFRSLISILLVTTLTYVIVFTLVPSNLIFRQDPNYNKMVTTPDKKDNYRNSVFERMGYISYYNSKELEIKAE
KIDSSVTVEPTKKNETIYKKYIASLGRGWQLKQFKESKRFYATRQIPIYERVWNFFTRLVVIDHPWKIKDSKNPNLERYV
RPEMDPAVGPALVGSGTKHKYLIYFNGQFPFVHQNIVKFDLGTSYPTYANIPVIQVITQGQGRSLSKEVKFPTGVTKSSP
IDIYSRTYKSPRLMDARDRANFGKDDAYSATRNNHAEPSMISNSFKIGIAGVLLSYLFGLPIGMLMSYYKDGLFDRFSTA
TTTFMLALPSIALVYIVRFIGSSVGLPDTFPLLGAGDPRSYVLPALILGILGTPGTVVWFRRYLVDLQGSDFVRFARAKG
LTEAEISKHHLFKQAMVPIVNGIPQAIVSTIAGATLTETVFAFPGMGKMLIDAIKVANNSMVVGLVFIFAVLSIIALLVG
DLLMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=255819 CTW00_RS05055 WP_003100862.1 1026140..1027639(+) (amiC) [Streptococcus iniae strain FP5228]
ATGAAAAAGTACATTGTTGAACGCCTGTTTAGGTCTTTGATATCAATTTTATTGGTAACGACATTGACTTATGTTATTGT
TTTTACCTTAGTACCATCTAATCTGATTTTCAGGCAAGACCCGAACTATAACAAAATGGTGACCACACCAGATAAAAAAG
ATAATTATCGCAATTCAGTTTTTGAGCGTATGGGTTATATTTCTTACTATAATAGTAAAGAACTTGAAATCAAAGCTGAA
AAAATAGATAGCAGTGTAACTGTTGAGCCAACTAAAAAGAATGAAACTATTTATAAAAAATACATTGCATCCTTAGGACG
TGGTTGGCAGTTGAAGCAGTTTAAAGAAAGCAAGCGTTTCTACGCAACGCGTCAAATTCCAATTTATGAACGTGTTTGGA
ATTTCTTTACTCGCTTAGTTGTTATCGATCATCCTTGGAAGATTAAGGATTCTAAAAATCCAAACTTAGAACGTTACGTA
CGTCCAGAAATGGATCCAGCTGTAGGACCTGCTTTAGTAGGTTCGGGAACAAAGCACAAATATCTGATTTATTTCAATGG
CCAGTTCCCATTTGTTCATCAAAATATAGTTAAATTTGATTTAGGAACATCATACCCAACTTATGCTAATATTCCTGTTA
TTCAGGTCATCACGCAAGGGCAAGGGCGTAGCCTGTCTAAAGAGGTTAAATTCCCAACAGGTGTAACAAAATCCTCACCA
ATTGACATTTACTCAAGAACTTATAAATCTCCAAGATTAATGGATGCTCGTGACCGCGCAAACTTTGGTAAAGACGATGC
TTACTCAGCAACACGCAATAACCATGCGGAGCCATCAATGATTTCTAATTCCTTTAAGATTGGTATAGCAGGTGTATTAC
TGTCATATTTATTTGGATTACCAATTGGAATGTTGATGTCTTATTATAAAGATGGTTTATTTGATCGTTTTTCTACAGCA
ACAACAACGTTTATGTTAGCTTTACCAAGTATTGCACTTGTCTATATTGTTCGTTTTATAGGTTCTAGTGTAGGATTGCC
TGATACCTTCCCATTGCTAGGTGCAGGAGATCCAAGGTCTTATGTATTACCGGCATTGATTCTAGGTATTTTAGGGACAC
CTGGAACGGTTGTGTGGTTCCGTCGTTATTTGGTTGACTTGCAAGGTAGTGATTTTGTTCGTTTTGCGCGTGCTAAAGGA
CTTACAGAGGCTGAAATTTCAAAACACCACTTGTTCAAACAAGCAATGGTGCCAATTGTTAATGGTATCCCACAAGCAAT
TGTCTCAACTATTGCTGGTGCAACCTTAACAGAAACAGTATTTGCTTTCCCAGGTATGGGGAAAATGCTTATTGATGCGA
TTAAAGTAGCCAATAACTCAATGGTCGTTGGATTAGTCTTCATTTTTGCCGTGCTTTCAATTATTGCATTGTTGGTTGGC
GATTTGCTTATGACTATTTTGGACCCACGTATTAAATTATCAAGTAAAGGAGGGAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GP27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.725

100

0.627
  amiC Streptococcus thermophilus LMD-9

62.325

100

0.623
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621

Multiple sequence alignment