Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   CTW00_RS05065 Genome accession   NZ_CP024843
Coordinates   1028571..1029641 (+) Length   356 a.a.
NCBI ID   WP_031239151.1    Uniprot ID   A0A3L8GMR4
Organism   Streptococcus iniae strain FP5228     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1023571..1034641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTW00_RS05050 (CTW00_01021) amiA3 1024096..1026075 (+) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator
  CTW00_RS05055 (CTW00_01022) amiC 1026140..1027639 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  CTW00_RS05060 (CTW00_01023) amiD 1027639..1028565 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  CTW00_RS05065 (CTW00_01024) amiE 1028571..1029641 (+) 1071 WP_031239151.1 ABC transporter ATP-binding protein Regulator
  CTW00_RS05070 (CTW00_01025) amiF 1029634..1030557 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  CTW00_RS05075 (CTW00_01027) - 1031022..1032189 (-) 1168 Protein_945 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40031.06 Da        Isoelectric Point: 5.9482

>NTDB_id=255821 CTW00_RS05065 WP_031239151.1 1028571..1029641(+) (amiE) [Streptococcus iniae strain FP5228]
MMENKEIILSAKNVVVEFDVRDRILTAIRDISVDLYEGEVLAVVGESGSGKSVLTKTFTGMLESNGRVAKGSINYRGKEL
TELKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGRQITEVIVKHQKKTKSEAKKLAIDYMNKVGIPEAEKRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQKEYQFTIIFITHDLGVVASIATNVAVMYAGEIVE
YGTVEDIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMTIDFEENVPRFEINGTHWAK
TWLLHPDAPKVQKPEVIRNLHDKISSKQIYREEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=255821 CTW00_RS05065 WP_031239151.1 1028571..1029641(+) (amiE) [Streptococcus iniae strain FP5228]
ATCATGGAAAACAAAGAAATTATTTTAAGTGCTAAAAATGTTGTCGTTGAATTTGACGTTCGTGACCGTATTTTGACAGC
GATTCGTGATATTTCCGTTGATTTATATGAAGGTGAAGTCCTTGCGGTTGTTGGAGAATCTGGTAGTGGAAAATCAGTGT
TGACCAAAACATTTACGGGGATGTTAGAATCTAACGGTCGTGTTGCCAAGGGTTCAATTAATTACCGCGGTAAAGAATTA
ACTGAATTAAAAAATCACAAAGATTGGGAAGGAATCCGTGGTGCTAAAATTGCAACCATATTCCAAGATCCAATGACAAG
TTTGGATCCAATCCAAACTATCGGAAGACAAATTACAGAAGTTATTGTCAAACATCAAAAGAAAACAAAATCAGAAGCTA
AAAAATTGGCCATTGATTACATGAATAAAGTTGGGATTCCAGAAGCAGAAAAACGTTTTGATGAATACCCATTTCAGTAT
TCGGGTGGTATGCGCCAACGTATTGTTATTGCAATTGCTCTAGCTTGTCGCCCAGACATCCTTATTTGTGATGAGCCAAC
AACTGCTCTAGATGTAACTATTCAGGCGCAAATTATTGATCTGCTAAAAACGCTCCAAAAAGAATATCAATTCACCATTA
TTTTTATTACCCATGATTTAGGCGTAGTAGCAAGTATTGCAACCAATGTTGCAGTTATGTATGCTGGTGAAATTGTTGAG
TATGGAACTGTTGAAGATATCTTTTATGATCCAAGACATCCATATACTTGGAGTTTGCTTTCAAGTTTGCCACAATTAGC
CGATGAAAAAGGTGTCTTATTCTCCATTCCAGGAACACCACCATCATTGTATAAACCGATTGTTGGCGATGCATTTGCTC
CAAGATCTCAGTATGCAATGACAATTGATTTTGAAGAGAATGTTCCAAGGTTTGAAATTAATGGGACACATTGGGCAAAG
ACATGGTTGCTTCATCCAGATGCACCAAAAGTGCAAAAGCCAGAAGTCATTCGAAATCTTCATGACAAAATTTCAAGTAA
ACAAATCTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GMR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.333

100

0.792
  amiE Streptococcus thermophilus LMG 18311

77.778

100

0.787
  amiE Streptococcus thermophilus LMD-9

77.778

100

0.787
  oppD Streptococcus mutans UA159

56.232

96.91

0.545

Multiple sequence alignment