Detailed information NTG0255783

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: OA04_RS21345
• Genome accession: NZ_CP024842
• Coordinates: 4670180..4671706 (+)
• Length: 508 a.a.
• NCBI ID: WP_103971733.1
• Uniprot ID: A0A7V8T862
• Organism: Pectobacterium versatile strain 3-2
• Function: require for natural transformation (predicted from homology) Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	4672151..4674776	4670180..4671706	flank	445

Gene organization within MGE regions

Location: 4670180..4674776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OA04_RS21345 (OA04_43040)	comM	4670180..4671706 (+)	1527	WP_103971733.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
OA04_RS21350	-	4671836..4671970 (+)	135	Protein_4105	IS4 family transposase	-
OA04_RS21355 (OA04_43060)	-	4672151..4673593 (-)	1443	WP_043135453.1	IS1182 family transposase	-
OA04_RS21360	-	4673727..4674776 (+)	1050	Protein_4107	IS4 family transposase	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55441.04 Da
• Isoelectric Point: 6.6199

>NTDB_id=255783 OA04_RS21345 WP_103971733.1 4670180..4671706(+) (comM) [Pectobacterium versatile strain 3-2]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPQIGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTHWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLTARQIQLKRANKINALLTSREIEKHCGLEMADAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide

• Length: 1527 bp

>NTDB_id=255783 OA04_RS21345 WP_103971733.1 4670180..4671706(+) (comM) [Pectobacterium versatile strain 3-2]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGTTTACCTGAAACCACCGTCAAGGAAGCGCGGGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTACCGATTGCTCTGGCGATTCTGGCGGCTTCAGAACAAATTGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATCAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGCGGAGAAGAGGAATTGCTCAGTTGTTCCGACATGACGCCCGTTCCACAGATAGGGGA
AGATACGCTCGATCTGAAAGATATCATCGGTCAGGAGCAAGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGTCATA
ACCTGCTCTTGCTAGGGCCACCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCGCCGTTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCACTGGCGGGCTAGGCC
ATTCAGAGCGCCTCACCATAGTTCCTCGATGGCTGCACTCGTGGGCGGAGGGTCGCTGCCCAAACCTGGAGAAATCTCGC
TCGCCCACAATGGAGTGCTGTTTCTGGATGAATTACCAGAGTTTGAGCGGCGCGTCCTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACGCGGGCCAAAGTATGCTACCCAGCACGCGTCCAGCTCGTTGCCGCAATGAA
TCCCAGTCCATCAGGACACTATCAGGGCATTCATAACCGATTGCCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACATTAT
CAAGGCGAAAGTAGCGCGACGATTCGCGAACGCGTGCTGACCGCACGGCAAATACAGCTGAAGCGCGCAAATAAAATCAA
CGCACTGCTCACTTCACGCGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGGCCTATCTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCGTGGCACAGGATATTGAAAGTCGCGCGCACGATCGCTGACCTCGGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

3D structure

• AlphaFold DB: A0A7V8T862

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	64.427	99.606	0.642
comM	Vibrio cholerae strain A1552	64.215	99.016	0.636
comM	Glaesserella parasuis strain SC1401	63.065	100	0.632
comM	Vibrio campbellii strain DS40M4	62.648	99.606	0.624
comM	Legionella pneumophila str. Paris	50.701	98.228	0.498
comM	Legionella pneumophila strain ERS1305867	50.701	98.228	0.498
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.304	100	0.469