Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RFER_RS02345 Genome accession   NC_007908
Coordinates   485575..487107 (-) Length   510 a.a.
NCBI ID   WP_011462796.1    Uniprot ID   Q221T0
Organism   Rhodoferax ferrireducens T118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 480575..492107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFER_RS02335 (Rfer_0469) - 480726..483020 (+) 2295 WP_011462794.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  RFER_RS02340 (Rfer_0470) - 483032..485578 (+) 2547 WP_011462795.1 chemotaxis protein CheW -
  RFER_RS02345 (Rfer_0471) comM 485575..487107 (-) 1533 WP_011462796.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RFER_RS02350 (Rfer_0472) glnK 487365..487703 (+) 339 WP_011462797.1 P-II family nitrogen regulator -
  RFER_RS02355 (Rfer_0473) amt 487738..489291 (+) 1554 WP_041790050.1 ammonium transporter -
  RFER_RS02360 (Rfer_0474) - 489734..490618 (-) 885 WP_011462799.1 LysR family transcriptional regulator -
  RFER_RS02365 (Rfer_0475) - 490720..491613 (+) 894 WP_011462800.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53837.84 Da        Isoelectric Point: 8.4980

>NTDB_id=25542 RFER_RS02345 WP_011462796.1 485575..487107(-) (comM) [Rhodoferax ferrireducens T118]
MSLSLVQSRALLGLDASAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSAIQNSGLEFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLAGYEFAGELSLSGELRPVRGALAMSLALHASRVVTQLVLPPGSAEEAALVPDAQVYSA
RHLLDVVQHFLPQDDNAPPAEPAAGWSRVTAAPQPELVRYLDLADVKGQLGAKRALEIAAAGGHSLLLMGPPGSGKSMLA
QRFAGLLPTMTTLEALQSAAVASLGGRFSLDKWAQRPTCSPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDELPEFPR
AALEALREPLESGVITISRAARRAEFPARFQLIGAMNPCPCGYLGSKQKVCRCTPDQVARYQSKLSGPLVDRIDLHVEVP
ALPAADLLQAAAGEATAVIRARCTAARERAMARQGKANQALQGQEIDHYLLLDDAAAKFLNLAAARLGWSARSTHRALKV
ARTIADLAGASSTQVTHVAEAMQYRRALRA

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=25542 RFER_RS02345 WP_011462796.1 485575..487107(-) (comM) [Rhodoferax ferrireducens T118]
ATGAGCCTGTCTTTGGTGCAAAGCCGTGCGCTGCTGGGCCTGGACGCGTCGGCGGTCACGGTGGAGGTTCACCTGGCCAA
TGGCCTGCCCAGCTTCACGCTGGTCGGCTTGGCCGACGTTGAGGTGAAGGAGGCGCGCGAGCGGGTGCGCTCTGCGATTC
AAAATTCCGGGCTGGAGTTTCCCCACAACAAGCGCATCACGGTCAATCTGGCGCCCGCCGACCTGCCCAAGGATTCGGGC
CGCTTTGACTTGCCGATTGCGTTGGGCATTCTGGCCGCCAGTGGCCAGATCGATGCGGCCCGTCTGGCGGGCTATGAATT
CGCCGGCGAGTTGTCGCTGTCGGGCGAGCTGCGCCCGGTGCGCGGCGCGCTGGCCATGAGCCTGGCTTTGCACGCCAGCC
GGGTGGTGACGCAACTGGTGTTGCCGCCCGGCAGCGCCGAAGAAGCCGCGCTGGTGCCCGACGCCCAGGTCTATAGCGCC
CGCCATCTGCTTGATGTGGTGCAGCATTTTTTGCCGCAGGACGACAACGCGCCGCCAGCGGAGCCCGCGGCGGGCTGGTC
GCGGGTCACGGCCGCGCCCCAGCCCGAGCTGGTACGGTATCTGGATCTGGCCGATGTCAAAGGTCAACTGGGCGCCAAAC
GCGCCCTGGAGATTGCCGCTGCTGGCGGCCACAGTCTGTTGCTGATGGGGCCGCCCGGCTCGGGCAAGTCGATGCTGGCG
CAACGCTTTGCCGGCCTGCTGCCCACCATGACGACCCTTGAGGCGCTGCAAAGCGCTGCCGTGGCCAGCCTGGGCGGGCG
CTTTTCGCTGGACAAGTGGGCGCAGCGGCCCACTTGCAGCCCGCACCACACCGCCAGCGCCGTGGCACTGGTGGGCGGCG
GTTCACCCCCGCGGCCCGGCGAAATTTCACTGGCGCACCATGGCGTGCTGTTCCTGGACGAATTGCCAGAATTCCCCCGT
GCCGCGCTGGAGGCGCTGCGCGAACCGCTGGAGTCGGGGGTGATCACGATTTCGCGCGCGGCAAGGCGCGCCGAATTTCC
GGCCCGCTTTCAGCTGATTGGCGCCATGAACCCCTGCCCTTGCGGCTATCTGGGATCAAAGCAAAAGGTCTGCCGCTGCA
CACCCGACCAGGTGGCGCGTTACCAGAGCAAGCTGAGCGGCCCGCTGGTGGATCGTATTGACCTGCATGTGGAAGTGCCG
GCCTTGCCGGCGGCGGACTTGCTGCAGGCAGCAGCCGGTGAAGCCACCGCCGTCATCCGCGCGCGTTGCACGGCCGCGCG
CGAGCGCGCCATGGCACGCCAGGGCAAGGCGAACCAGGCGCTGCAGGGACAGGAAATAGACCACTATTTGTTGCTTGACG
ATGCCGCCGCCAAGTTTCTCAACCTGGCGGCCGCGCGCCTGGGCTGGTCGGCCCGCAGCACACACCGGGCCCTTAAAGTG
GCCCGCACCATCGCCGACCTGGCCGGGGCAAGCAGCACCCAGGTGACACACGTGGCCGAGGCGATGCAATACCGGCGTGC
GCTGCGCGCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q221T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.346

99.608

0.531
  comM Haemophilus influenzae Rd KW20

52.539

100

0.527
  comM Glaesserella parasuis strain SC1401

52.456

99.804

0.524
  comM Vibrio campbellii strain DS40M4

51.272

100

0.514
  comM Legionella pneumophila str. Paris

49.416

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.416

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

99.216

0.429

Multiple sequence alignment