Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   COO91_RS12470 Genome accession   NZ_CP024785
Coordinates   2706480..2706845 (+) Length   121 a.a.
NCBI ID   WP_069073698.1    Uniprot ID   A0A2D0HCN5
Organism   Nostoc flagelliforme CCNUN1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2701480..2711845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COO91_RS12455 (COO91_02897) tilS 2701772..2702770 (+) 999 WP_100898748.1 tRNA lysidine(34) synthetase TilS -
  COO91_RS12460 (COO91_02898) hmpF 2702840..2704600 (-) 1761 WP_100898749.1 pilus motility taxis protein HmpF -
  COO91_RS12465 (COO91_02899) - 2704980..2706158 (+) 1179 WP_100898750.1 response regulator -
  COO91_RS12470 (COO91_02900) pilH 2706480..2706845 (+) 366 WP_069073698.1 response regulator transcription factor Machinery gene
  COO91_RS12475 (COO91_02901) - 2706859..2707389 (+) 531 WP_100898751.1 chemotaxis protein CheW -
  COO91_RS12480 (COO91_02902) - 2707404..2710337 (+) 2934 WP_100902939.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13350.52 Da        Isoelectric Point: 4.8604

>NTDB_id=255415 COO91_RS12470 WP_069073698.1 2706480..2706845(+) (pilH) [Nostoc flagelliforme CCNUN1]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=255415 COO91_RS12470 WP_069073698.1 2706480..2706845(+) (pilH) [Nostoc flagelliforme CCNUN1]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTGAAAGCAACTGGCCTAAC
AGTAACCCATGCCAGTGATGGATTAGAAGCATTGGAGGCAATTCAAATAGCACCTCCCGATTTAGTGGTATTGGATATTG
TCATGCCCCGAATGAACGGCTACGAAGTTTGTCGGCGCTTAAAATCCGATCCAAAAACCCAAAATGTCCCTGTGGTTATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGCTATTGGGGCATGAAGCAGGGTGCAGACGCTTACATAGCCAAACCATTTCA
ACCAACAGAGTTGGTGGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0HCN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment