Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DMA15_RS27145 Genome accession   NZ_CP029617
Coordinates   6036064..6037683 (+) Length   539 a.a.
NCBI ID   WP_125515366.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01529     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6031064..6042683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMA15_RS27110 (DMA15_27085) lepB 6031122..6031841 (+) 720 WP_125515360.1 signal peptidase I -
  DMA15_RS27115 (DMA15_27090) lepB 6031834..6032919 (+) 1086 WP_125515361.1 signal peptidase I -
  DMA15_RS27120 (DMA15_27095) lepB 6032804..6033766 (+) 963 WP_125515362.1 signal peptidase I -
  DMA15_RS27125 (DMA15_27100) lepB 6033847..6034602 (+) 756 WP_125515363.1 signal peptidase I -
  DMA15_RS27130 (DMA15_27105) - 6034640..6035131 (+) 492 WP_240660266.1 NUDIX hydrolase -
  DMA15_RS27135 (DMA15_27110) - 6035187..6035495 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  DMA15_RS27140 (DMA15_27115) - 6035687..6036064 (+) 378 WP_164551837.1 YraN family protein -
  DMA15_RS27145 (DMA15_27120) comM 6036064..6037683 (+) 1620 WP_125515366.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DMA15_RS27150 (DMA15_27125) - 6037680..6038363 (+) 684 Protein_5337 DNA-processing protein DprA -
  DMA15_RS27155 (DMA15_27130) - 6038562..6038855 (-) 294 WP_125515368.1 hypothetical protein -
  DMA15_RS27160 (DMA15_27135) - 6038956..6039474 (-) 519 WP_125515369.1 DUF6262 family protein -
  DMA15_RS37135 - 6039471..6041954 (-) 2484 WP_206302850.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 539 a.a.        Molecular weight: 55867.28 Da        Isoelectric Point: 6.5700

>NTDB_id=255073 DMA15_RS27145 WP_125515366.1 6036064..6037683(+) (comM) [Streptomyces sp. WAC 01529]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGVLPAVLAAADAGYEQVVVPECTAAEASLVPGVSVLGVRS
LRQLIAVLTDEPVPQEEPDEPGRPDPMLAGLCVPGTGVGTGLGGAMDDAHALDLADVVGQTSARTAVEVAAAGAHHLFLQ
GPPGAGKTMLAERLPAILPRLTREESLEVTAVHSVAGMLPPGKPLVDLAPYCAPHHSATMQSLVGGGKGLARPGAVSLAH
RGVLFLDEAPEFSSQTLDSLRQPLESGHVVIARSAGVVRLPAKFLMVLAANPCPCGRHTLLGDGCECPASVVRRYQARLS
GPLLDRVDLKVEVEAVTRSELAGYGTKGESTRTVADRVRAARERAAARLSGTGWRTNSEVPGHALRTRWPAAPGALDAAE
LDLERGFLTARGLDRVLRVAWTVADLAGHDRPCAQDVALALQLRTGISRGVPMPLGVPR

Nucleotide


Download         Length: 1620 bp        

>NTDB_id=255073 DMA15_RS27145 WP_125515366.1 6036064..6037683(+) (comM) [Streptomyces sp. WAC 01529]
ATGGGATTCGCGCGTACGTGCTCCGTGGCGCTCGTCGGCGTCGAGGGCGTGGTCGTCGAGGTGCAGGCCGATCTGGAGCC
GGGTGTCGCCGCGTTCACGCTGGTGGGGCTGCCGGACAAGAGCCTGACGGAGAGCCGGGACCGGGTCAGGGCCGCCGTGG
TCAACTCGGGCGGGGAGTGGCCCCAGAAGAAGCTCACGGTGGGGCTGAGCCCGGCGTCGGTCCCCAAAGGCGGCAGCGGT
TTCGACCTCGCCGTGGCGTGCGCGGTCCTCGGGGCGGCCGAGCGGATCGATCCCAGAGTGCTCGCCGACATCGTCATGAT
CGGTGAACTGGGGCTCGACGGGAGGGTGCGCCCGGTCCGCGGAGTGCTGCCGGCGGTCCTGGCCGCGGCGGACGCGGGGT
ACGAACAGGTGGTCGTCCCGGAGTGCACGGCCGCGGAGGCCTCCCTGGTGCCGGGGGTCTCGGTCCTCGGGGTGCGCAGC
CTGCGACAGCTCATCGCGGTGCTCACCGACGAGCCGGTGCCGCAGGAGGAGCCGGACGAGCCGGGGCGGCCCGACCCCAT
GCTCGCCGGGCTCTGCGTCCCGGGCACCGGGGTCGGCACGGGCCTCGGCGGCGCGATGGACGACGCCCACGCGCTGGACC
TGGCCGATGTCGTCGGGCAGACCTCGGCGAGGACCGCCGTGGAGGTGGCCGCCGCCGGAGCGCACCACCTCTTTCTTCAG
GGCCCGCCCGGCGCGGGCAAGACCATGCTCGCGGAGCGGCTGCCGGCGATCCTGCCGCGGCTGACCCGCGAGGAGTCCCT
GGAAGTGACGGCGGTCCACTCGGTGGCGGGCATGCTCCCGCCGGGCAAACCGCTGGTGGACCTCGCGCCGTACTGCGCGC
CGCACCACTCCGCGACGATGCAGTCGCTCGTGGGCGGCGGCAAGGGACTGGCACGGCCGGGAGCGGTCTCGTTGGCTCAT
CGAGGAGTGCTTTTCCTGGACGAGGCGCCGGAGTTCAGCAGCCAGACCCTGGACTCCCTGCGGCAGCCGCTCGAGTCCGG
CCATGTGGTGATCGCTCGCAGCGCGGGGGTGGTGCGGCTGCCCGCGAAATTCCTGATGGTGCTCGCGGCCAACCCCTGTC
CTTGCGGGCGGCACACCCTGCTCGGCGACGGCTGTGAGTGCCCGGCCTCCGTGGTCCGGCGCTATCAGGCCCGCCTCTCG
GGGCCGCTGCTCGACCGGGTCGACCTGAAGGTGGAGGTGGAGGCCGTCACCCGGTCCGAACTGGCCGGGTACGGCACGAA
GGGCGAGTCCACGCGGACCGTCGCCGACCGGGTGCGCGCCGCGCGCGAGAGAGCGGCGGCCAGGCTGTCCGGCACCGGCT
GGCGGACCAACAGCGAGGTCCCCGGGCATGCGTTGCGCACCCGCTGGCCCGCCGCCCCGGGAGCGCTGGACGCGGCCGAG
CTGGACCTGGAGCGCGGCTTCCTGACGGCCCGTGGGCTCGACCGCGTCCTGCGGGTGGCGTGGACCGTGGCGGACCTGGC
GGGGCACGACCGGCCCTGCGCGCAAGACGTCGCCCTGGCACTCCAGCTGCGCACGGGGATCTCGCGCGGGGTGCCGATGC
CGCTCGGGGTGCCGAGGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(213-420)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(428-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.381

97.403

0.393
  comM Vibrio cholerae strain A1552

40.381

97.403

0.393
  comM Vibrio campbellii strain DS40M4

40.157

94.249

0.378
  comM Haemophilus influenzae Rd KW20

37.358

98.33

0.367
  comM Glaesserella parasuis strain SC1401

36.773

98.887

0.364
  comM Legionella pneumophila str. Paris

37.121

97.959

0.364
  comM Legionella pneumophila strain ERS1305867

37.121

97.959

0.364