Detailed information NTG0025484

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SAOUHSC_01750
• Genome accession: NC_007795
• Coordinates: 1654804..1655808 (-)
• Length: 334 a.a.
• NCBI ID: YP_500256.1
• Uniprot ID: Q2FXT4
• Organism: Staphylococcus aureus subsp. aureus NCTC 8325
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1649804..1660808

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAOUHSC_01747	-	1652336..1652596 (-)	261	YP_500253.1	preprotein translocase subunit YajC	-
SAOUHSC_01748	tgt	1652615..1653754 (-)	1140	YP_500254.1	queuine tRNA-ribosyltransferase	-
SAOUHSC_01749	queA	1653777..1654802 (-)	1026	YP_500255.1	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	-
SAOUHSC_01750	ruvB	1654804..1655808 (-)	1005	YP_500256.1	Holliday junction DNA helicase RuvB	Machinery gene
SAOUHSC_01751	ruvA	1655840..1656442 (-)	603	YP_500257.1	Holliday junction DNA helicase RuvA	Machinery gene
SAOUHSC_01752	-	1656456..1656911 (-)	456	YP_500258.1	hypothetical protein	-
SAOUHSC_01753	obgE	1656924..1658216 (-)	1293	YP_500259.1	GTPase ObgE	-
SAOUHSC_01755	rpmA	1658571..1658855 (-)	285	YP_500260.1	50S ribosomal protein L27	-
SAOUHSC_01756	-	1658867..1659187 (-)	321	YP_500261.1	hypothetical protein	-
SAOUHSC_01757	rplU	1659193..1659501 (-)	309	YP_500262.1	50S ribosomal protein L21	-
SAOUHSC_01758	-	1659668..1660198 (-)	531	YP_500263.1	hypothetical protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=25484 SAOUHSC_01750 YP_500256.1 1654804..1655808(-) (ruvB) [Staphylococcus aureus subsp. aureus NCTC 8325]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=25484 SAOUHSC_01750 YP_500256.1 1654804..1655808(-) (ruvB) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAACGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGCGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q2FXT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515