Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SAOUHSC_01751 Genome accession   NC_007795
Coordinates   1655840..1656442 (-) Length   200 a.a.
NCBI ID   YP_500257.1    Uniprot ID   Q2FXT3
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1650840..1661442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_01747 - 1652336..1652596 (-) 261 YP_500253.1 preprotein translocase subunit YajC -
  SAOUHSC_01748 tgt 1652615..1653754 (-) 1140 YP_500254.1 queuine tRNA-ribosyltransferase -
  SAOUHSC_01749 queA 1653777..1654802 (-) 1026 YP_500255.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  SAOUHSC_01750 ruvB 1654804..1655808 (-) 1005 YP_500256.1 Holliday junction DNA helicase RuvB Machinery gene
  SAOUHSC_01751 ruvA 1655840..1656442 (-) 603 YP_500257.1 Holliday junction DNA helicase RuvA Machinery gene
  SAOUHSC_01752 - 1656456..1656911 (-) 456 YP_500258.1 hypothetical protein -
  SAOUHSC_01753 obgE 1656924..1658216 (-) 1293 YP_500259.1 GTPase ObgE -
  SAOUHSC_01755 rpmA 1658571..1658855 (-) 285 YP_500260.1 50S ribosomal protein L27 -
  SAOUHSC_01756 - 1658867..1659187 (-) 321 YP_500261.1 hypothetical protein -
  SAOUHSC_01757 rplU 1659193..1659501 (-) 309 YP_500262.1 50S ribosomal protein L21 -
  SAOUHSC_01758 - 1659668..1660198 (-) 531 YP_500263.1 hypothetical protein -
  SAOUHSC_01759 - 1660198..1661040 (-) 843 YP_500264.1 rod shape-determining protein MreC -
  SAOUHSC_01760 - 1661240..1661359 (-) 120 YP_500265.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=25485 SAOUHSC_01751 YP_500257.1 1655840..1656442(-) (ruvA) [Staphylococcus aureus subsp. aureus NCTC 8325]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=25485 SAOUHSC_01751 YP_500257.1 1655840..1656442(-) (ruvA) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FXT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment