Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CPZ87_RS27930 Genome accession   NZ_CP024645
Coordinates   6089988..6091514 (+) Length   508 a.a.
NCBI ID   WP_085753719.1    Uniprot ID   A0A1W6LGM9
Organism   Piscinibacter gummiphilus strain NBRC 109400     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6084988..6096514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ87_RS27915 (CPZ87_27910) - 6086706..6087167 (+) 462 WP_085753717.1 helix-turn-helix domain-containing protein -
  CPZ87_RS27920 (CPZ87_27915) - 6087190..6088278 (-) 1089 WP_099960005.1 peptidoglycan-binding protein -
  CPZ87_RS27925 (CPZ87_27920) - 6088520..6089872 (+) 1353 WP_085753718.1 SEL1-like repeat protein -
  CPZ87_RS27930 (CPZ87_27925) comM 6089988..6091514 (+) 1527 WP_085753719.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CPZ87_RS27935 (CPZ87_27930) - 6091884..6092765 (+) 882 WP_085754355.1 transporter substrate-binding domain-containing protein -
  CPZ87_RS27940 (CPZ87_27935) - 6092762..6094732 (+) 1971 WP_099960007.1 ATP-binding protein -
  CPZ87_RS27945 (CPZ87_27940) - 6094722..6096065 (+) 1344 WP_085753720.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53543.51 Da        Isoelectric Point: 7.8430

>NTDB_id=254695 CPZ87_RS27930 WP_085753719.1 6089988..6091514(+) (comM) [Piscinibacter gummiphilus strain NBRC 109400]
MSLAVLHSRALDGLGAPEVTVEVHLANGLPLFTLVGLADTEVREARERVRAALINCGLTFPHNKRITVNLAPADLPKESG
RFDLPIALGILAASGQIDLKRTEAFEFAGELSLAGDLRPVRGALALALALRRGSGSGRALVLPVDCAREAALVEGLVIHG
ARHLLDVVEAFRPAPSDTFVEALARASPEPVVPTGAIPDLREVKGQAGAKRALEIAAAGQHSLLMVGPPGTGKSMLASRF
AGLLPPMPIEAALESAALLSLHGSFTAERWRQRPFRAPHHSASSAALVGGGSPPRPGEISLAHHGVLFLDELVELRRDAL
EALREPLETGRIVISRAARQAEYPARFQLVAAMNPCPCGHHGSPLRSCRCTPDAVQRYQSRLSGPLLDRIDLQVEVTAVP
PAALAAAPDGETTATIAARVALAFDVAVARQGVPNARLEGDALDAHTALDDTSSAFLQAASARLGWSARTHHRVLRIART
IADLAGEATLRTPHLAEAIQHRRVLSGA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=254695 CPZ87_RS27930 WP_085753719.1 6089988..6091514(+) (comM) [Piscinibacter gummiphilus strain NBRC 109400]
ATGTCCCTCGCCGTCCTCCACAGCCGCGCCCTCGACGGCCTCGGTGCGCCTGAAGTCACGGTCGAGGTCCATCTTGCCAA
CGGCCTGCCGCTGTTCACGCTGGTGGGACTCGCCGACACCGAGGTGCGTGAAGCGCGTGAACGCGTGCGGGCCGCACTCA
TCAACTGTGGACTGACCTTCCCACACAACAAGCGCATCACCGTCAACCTCGCGCCGGCCGACCTGCCGAAAGAGTCGGGG
CGGTTCGATCTGCCCATTGCGCTGGGCATCCTCGCCGCCAGCGGGCAGATCGATCTCAAGCGTACCGAGGCATTCGAGTT
CGCGGGGGAGTTGTCGCTCGCGGGAGACCTGCGGCCCGTGCGCGGCGCGCTGGCGCTCGCCCTCGCGTTGCGGCGCGGCA
GCGGGTCGGGGCGGGCGCTGGTGTTGCCGGTGGACTGCGCGCGCGAGGCCGCGCTGGTGGAGGGGCTCGTGATCCATGGG
GCGCGCCATCTGCTCGATGTGGTCGAGGCGTTCCGGCCGGCACCGTCCGACACGTTCGTCGAGGCGCTCGCACGCGCCTC
GCCGGAGCCCGTTGTTCCGACCGGCGCCATCCCCGACCTGCGCGAGGTCAAGGGCCAGGCCGGCGCCAAGCGGGCGCTGG
AGATTGCCGCGGCCGGCCAGCACAGCCTGCTGATGGTGGGGCCGCCGGGCACCGGCAAGTCGATGCTCGCGTCGCGCTTC
GCCGGCCTGCTGCCGCCCATGCCCATCGAGGCCGCGCTCGAATCCGCGGCGCTGCTGAGCCTGCACGGCAGCTTCACGGC
CGAACGCTGGCGGCAGCGGCCGTTCAGGGCGCCGCATCACAGTGCGTCGTCGGCGGCGCTGGTCGGGGGCGGGTCACCGC
CTCGGCCCGGGGAAATCTCCCTCGCCCACCACGGGGTTCTTTTTCTCGATGAGCTCGTCGAGCTTCGTCGCGATGCCTTG
GAGGCACTGCGCGAGCCTCTGGAAACAGGCCGCATCGTGATCTCGCGCGCCGCGCGGCAGGCCGAGTACCCCGCGAGGTT
CCAGCTCGTGGCGGCGATGAACCCTTGCCCTTGCGGGCACCACGGCAGTCCGCTGCGCTCCTGCCGCTGCACGCCGGATG
CGGTGCAGCGCTACCAGTCGCGCCTGAGCGGTCCGCTGCTCGACCGCATCGACCTGCAGGTGGAGGTGACGGCGGTGCCG
CCCGCGGCGCTGGCCGCGGCGCCCGACGGAGAGACCACCGCGACCATCGCGGCCCGGGTGGCGCTTGCGTTCGACGTGGC
GGTGGCCCGGCAAGGCGTGCCGAACGCCCGGCTGGAAGGTGACGCGCTCGATGCCCACACGGCGCTGGATGACACGTCGT
CCGCCTTCCTGCAGGCGGCCTCGGCGCGCCTGGGTTGGTCGGCACGCACGCACCACCGCGTGCTGCGCATCGCCCGCACC
ATCGCCGACCTGGCCGGCGAAGCCACGCTGCGCACGCCCCACCTCGCCGAGGCCATCCAGCACCGGCGCGTGCTCAGCGG
CGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-401)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6LGM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.964

99.606

0.528
  comM Haemophilus influenzae Rd KW20

50.491

100

0.506
  comM Vibrio campbellii strain DS40M4

50.794

99.213

0.504
  comM Glaesserella parasuis strain SC1401

50.493

99.803

0.504
  comM Legionella pneumophila str. Paris

46.365

100

0.465
  comM Legionella pneumophila strain ERS1305867

46.365

100

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.383

100

0.427

Multiple sequence alignment