Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DLM49_RS09690 Genome accession   NZ_CP029601
Coordinates   2272528..2274153 (-) Length   541 a.a.
NCBI ID   WP_125503996.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01438     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267528..2279153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM49_RS09670 (DLM49_09695) - 2268545..2269144 (+) 600 WP_125503993.1 M23 family metallopeptidase -
  DLM49_RS09675 (DLM49_09700) - 2269607..2270164 (-) 558 WP_125510027.1 TetR/AcrR family transcriptional regulator -
  DLM49_RS09680 (DLM49_09705) whiG 2270256..2271098 (-) 843 WP_125503994.1 RNA polymerase sigma factor WhiG -
  DLM49_RS09685 (DLM49_09710) dprA 2271371..2272531 (-) 1161 WP_125503995.1 DNA-processing protein DprA -
  DLM49_RS09690 (DLM49_09715) comM 2272528..2274153 (-) 1626 WP_125503996.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DLM49_RS09695 (DLM49_09720) - 2274155..2274526 (-) 372 WP_125503997.1 YraN family protein -
  DLM49_RS09700 (DLM49_09725) - 2274646..2274954 (-) 309 WP_003993268.1 DUF2469 domain-containing protein -
  DLM49_RS09705 (DLM49_09730) - 2275008..2275535 (-) 528 WP_125503998.1 NUDIX hydrolase -
  DLM49_RS09710 (DLM49_09735) lepB 2275525..2276298 (-) 774 WP_125503999.1 signal peptidase I -
  DLM49_RS09715 (DLM49_09740) lepB 2276332..2277321 (-) 990 WP_206302295.1 signal peptidase I -
  DLM49_RS09720 (DLM49_09745) lepB 2277212..2278300 (-) 1089 Protein_1941 signal peptidase I -
  DLM49_RS09725 (DLM49_09750) lepB 2278293..2279033 (-) 741 WP_125504002.1 signal peptidase I -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 55929.99 Da        Isoelectric Point: 6.6336

>NTDB_id=254693 DLM49_RS09690 WP_125503996.1 2272528..2274153(-) (comM) [Streptomyces sp. WAC 01438]
MGFARTCAVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKAGSG
FDLAVACAVLGAAERIDPRALADIVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECAAAEAALVPGVSVLGIRS
LRQLIAVLTDEPVPEEAAEEPSRPDPLLAGLRVPGTGAATGVHSADAAQHDQGHDLADVVGQLSARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPSILPPLDRQASLEVTAVHSVAGLLPPGKPLIDTAPYCAPHHSATMQALVGGGPGTARPGAVSL
AHRGVLFLDETPEFSSRALDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSGTGDQCECPPSAIRRYQAR
LSGPLLDRVDLRVEVDRVTRTELTASGARGETTATVAARVRTARERAAARLAGTPWRTNSEVPGRELRSRWHAAPGAMDD
AERGLERGVLTARGLDRVLRVAWTVADLGGHDRPDAGDVALALQLRTGVPRGVPMTVGAAV

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=254693 DLM49_RS09690 WP_125503996.1 2272528..2274153(-) (comM) [Streptomyces sp. WAC 01438]
ATGGGGTTCGCCCGTACGTGCGCGGTGGCGCTGGTGGGCGTCGAGGGCGTCGTCGTGGAGGTGCAGGCCGACCTGGAACC
GGGGGTCGCGGCGTTCACGCTGGTGGGACTGCCGGACAAGAGCCTGACCGAGAGCCGGGACCGGGTCAGGGCGGCCGTGG
TCAACTCCGGCGGGGAGTGGCCGCAGAAGAAGCTCACCGTGGGGCTCAGCCCGGCCTCGGTGCCGAAGGCCGGGAGCGGG
TTCGACCTGGCCGTCGCGTGCGCCGTGCTCGGCGCCGCCGAGCGGATCGATCCACGGGCGCTCGCCGACATCGTGATGAT
CGGCGAACTGGGCCTGGACGGCCGGGTACGGCCGGTGCGCGGCATCCTGCCCGCCGTGCTGGCCGCGGCCGACGCGGGCT
ACGAGCAGGTGGTGGTGCCCGAGTGCGCCGCGGCCGAGGCCGCGCTGGTGCCGGGTGTGTCCGTGCTGGGCATCCGCAGC
CTGCGCCAGCTGATCGCGGTGCTCACCGACGAGCCCGTGCCCGAGGAGGCGGCCGAGGAACCGTCGCGCCCCGACCCGCT
GCTCGCCGGGCTGCGCGTCCCCGGCACCGGAGCGGCCACCGGCGTGCACAGCGCCGACGCGGCACAGCACGACCAGGGCC
ACGACCTCGCGGACGTCGTGGGCCAGCTCTCGGCGCGGACGGCGGTGGAGGTGGCCGCGGCGGGCGGACACCACCTGTTC
CTCGAAGGGCCGCCCGGCGCAGGCAAGACCATGCTGGCGGAGCGGCTGCCGTCGATCCTGCCGCCGCTGGACCGGCAGGC
GTCCCTCGAGGTGACGGCCGTGCACTCGGTGGCGGGCCTGCTGCCCCCGGGCAAGCCCCTGATCGACACGGCACCCTACT
GCGCCCCGCACCACTCGGCCACGATGCAGGCACTCGTCGGCGGCGGCCCCGGCACGGCCCGGCCGGGAGCGGTCTCCCTC
GCACACCGCGGCGTGCTGTTCCTGGACGAGACACCGGAGTTCAGCAGCCGGGCCCTGGACGCCCTGCGCCAGCCGCTGGA
GGCCGGGCACGTGGTCATCGCGCGCAGTGCGGGCGTCGTGCGCTTCCCGGCGCGGTTCCTGATGGTGCTCGCCGCCAACC
CGTGCCCCTGCGGGCGCTTCTCGGGGACCGGTGACCAGTGCGAATGCCCGCCCTCGGCGATCCGCCGCTACCAGGCCAGA
CTGTCCGGGCCGCTGCTCGACCGGGTCGACCTGCGCGTCGAGGTCGACCGCGTCACCCGCACCGAGCTGACGGCGAGCGG
TGCCCGCGGCGAGACCACCGCCACGGTCGCCGCACGGGTACGCACCGCCCGGGAGCGCGCGGCGGCGCGGCTCGCCGGCA
CACCGTGGCGGACCAACAGCGAGGTCCCCGGCCGGGAGCTGCGCAGCCGCTGGCACGCCGCACCCGGCGCCATGGACGAC
GCCGAGCGCGGTCTGGAGCGCGGTGTGCTCACCGCCCGGGGGCTGGACCGGGTGCTGCGGGTCGCCTGGACCGTCGCCGA
CCTCGGCGGACACGATCGGCCCGACGCCGGGGACGTCGCCCTCGCCCTGCAACTGCGCACCGGCGTACCGCGCGGGGTGC
CCATGACGGTCGGGGCGGCGGTATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.4

98.521

0.388
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.509

94.455

0.383
  comM Vibrio cholerae strain A1552

40.509

94.455

0.383
  comM Acinetobacter baylyi ADP1

40.157

93.9

0.377
  comM Haemophilus influenzae Rd KW20

37.828

98.706

0.373
  comM Legionella pneumophila str. Paris

36.449

98.891

0.36
  comM Legionella pneumophila strain ERS1305867

36.449

98.891

0.36
  comM Glaesserella parasuis strain SC1401

36.792

97.967

0.36