Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CS557_RS14360 Genome accession   NZ_CP024632
Coordinates   3052041..3053528 (+) Length   495 a.a.
NCBI ID   WP_099949533.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3047041..3058528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS14335 (CS557_14340) ribD 3047901..3049001 (-) 1101 WP_099949334.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS557_RS14340 (CS557_14345) nrdR 3049014..3049478 (-) 465 WP_004957298.1 transcriptional regulator NrdR -
  CS557_RS14345 (CS557_14350) - 3049650..3051062 (-) 1413 WP_099949335.1 ammonium transporter -
  CS557_RS14350 (CS557_14355) glnK 3051130..3051468 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  CS557_RS14355 (CS557_14360) - 3051744..3051971 (+) 228 WP_004917059.1 accessory factor UbiK family protein -
  CS557_RS14360 (CS557_14365) comM 3052041..3053528 (+) 1488 WP_099949533.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CS557_RS14365 (CS557_14370) - 3053564..3054352 (-) 789 WP_099949336.1 TorF family putative porin -
  CS557_RS14370 (CS557_14375) - 3054698..3055468 (-) 771 WP_004917065.1 TorF family putative porin -
  CS557_RS14375 (CS557_14380) - 3056210..3057538 (+) 1329 WP_099949337.1 OprD family outer membrane porin -
  CS557_RS14380 (CS557_14385) ppa 3057644..3058171 (-) 528 WP_004957263.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54302.94 Da        Isoelectric Point: 7.7715

>NTDB_id=254606 CS557_RS14360 WP_099949533.1 3052041..3053528(+) (comM) [Acinetobacter junii strain lzh-X15]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEGFEFIGELALDGHLRPTSGALTIAMACQQAKHHLVLPDSNLDEANQLEDFQVYPAKHL
QDVCAHFSGSSQIKAAPQRSISSLSQYQYDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHHFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHRGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQAHELQDQKPSE
NSETVRHRVIKAYQQQIKRQQCLNQALSPQLLDQHARLDEGSAKIIEIAQQRLNLSARAYHRVLRVARTIADLAESDMIS
SSHLTEALSYRGSNS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=254606 CS557_RS14360 WP_099949533.1 3052041..3053528(+) (comM) [Acinetobacter junii strain lzh-X15]
ATGTCTTTTGCAAAAATTTATACAAGGGGATTATTGGGGCTACATGCCCCTCAAATCGAGGTCGAAGTTCATATTAGTTC
TGGCCTACCGTCTTTAACCATCGTGGGTTTACCTGAAGCAGCCGTCCGAGAAAGTAAAGATCGCGTTCGATCTGCAATAA
TTAATAGTGGTTTTCTTTTCCCAACCAAACGCTTAACCATCAATTTAGCACCCGCAGACTTGCCCAAAGATGGGTCACGA
CTTGACCTACCAATTGCTTTGGGGATTTTAATCGCTTCAGGTCAGCTTCCTGAAAATTGTACGGAAGGATTTGAATTTAT
TGGTGAACTTGCTTTGGATGGTCATTTACGCCCAACTTCAGGGGCATTAACTATTGCTATGGCTTGTCAGCAAGCTAAGC
ATCATTTAGTTCTTCCAGATTCAAATTTGGACGAGGCAAATCAATTAGAAGACTTTCAAGTTTATCCTGCCAAACATTTA
CAAGATGTATGTGCACATTTTTCGGGCAGCAGCCAAATAAAAGCCGCACCACAACGATCTATTTCATCATTATCACAATA
TCAATACGATCTTGCCGATGTTAAAGGTCAGCTTCGCCCACGCCGAGCATTAGAAATTGCAGCTGCAGGAGGTCATTCAT
TACTCTTTAAGGGACCACCTGGCACTGGAAAAACATTACTTGCATCTCGACTGCCTTCAATTTTACCCCCTTTGAATGCT
CAAGAAAATTTAGAGGTTGCTAGTATCTATTCCGTAGCAAATGCTCAACATCATTTCGGTCAGCGCCCTTTTCGTGCACC
TCACCATACAGCATCTGCGATCGCTTTGGTTGGTGGAGGCTCTCAACCAAAACCTGGAGAAATTACGCTTGCTCATCGCG
GCGTTTTGTTTTTAGATGAATTACCTGAATTCGACCGCAAAGTGCTTGAAGTTCTGCGCCAACCTTTAGAGTCTAAAGAA
ATCGTAATTTCTCGCGCGGCGAGACAAATGACCTTCCCTGCAAATTTTCAGTTTATCGCTGCAATGAATCCATGCCCTTG
TGGATATGCATTTAATCAAGATAGTCGTTGTCAGTGTTCTCCTGAAAGTATCCAGCGTTATCAAAATCGAATTTCAGGTC
CACTTTTGGATCGAATTGATCTACATATCGATGTTCCCCCCTTGCAAGCTCATGAGCTACAAGACCAAAAACCCTCAGAA
AACTCTGAAACTGTTCGTCATCGAGTGATAAAAGCATATCAGCAACAAATCAAAAGACAGCAATGCTTAAACCAAGCGCT
TTCACCCCAACTTTTGGATCAACATGCTCGTTTAGACGAGGGATCTGCAAAAATTATTGAAATAGCACAACAAAGATTAA
ATCTATCGGCCCGTGCTTATCATCGGGTACTTCGCGTTGCAAGAACGATTGCTGACTTAGCTGAGAGTGACATGATATCT
AGCTCACATTTAACAGAAGCCTTGTCTTATCGAGGCAGCAATAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.606

100

0.519
  comM Glaesserella parasuis strain SC1401

50.4

100

0.509
  comM Vibrio campbellii strain DS40M4

49.899

100

0.499
  comM Haemophilus influenzae Rd KW20

49.299

100

0.497
  comM Legionella pneumophila str. Paris

48.193

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.193

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.463

Multiple sequence alignment