Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DLJ52_RS10080 Genome accession   NZ_CP029559
Coordinates   2074529..2075119 (-) Length   196 a.a.
NCBI ID   WP_019769153.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2069529..2080119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS10060 (DLJ52_10060) - 2071109..2073022 (+) 1914 WP_019775059.1 ABC transporter ATP-binding protein/permease -
  DLJ52_RS10065 (DLJ52_10065) - 2073061..2073324 (+) 264 WP_109982789.1 hypothetical protein -
  DLJ52_RS10070 (DLJ52_10070) - 2073374..2073775 (+) 402 WP_019777428.1 helix-turn-helix transcriptional regulator -
  DLJ52_RS10075 (DLJ52_10075) - 2073809..2074360 (-) 552 WP_002960562.1 DNA-3-methyladenine glycosylase I -
  DLJ52_RS10080 (DLJ52_10080) ruvA 2074529..2075119 (-) 591 WP_019769153.1 Holliday junction branch migration protein RuvA Machinery gene
  DLJ52_RS10085 (DLJ52_10085) hexB 2075351..2077297 (-) 1947 WP_109982790.1 DNA mismatch repair endonuclease MutL Machinery gene
  DLJ52_RS10090 (DLJ52_10090) hexA 2077538..2080099 (-) 2562 WP_109982791.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21527.72 Da        Isoelectric Point: 5.6635

>NTDB_id=254146 DLJ52_RS10080 WP_019769153.1 2074529..2075119(-) (ruvA) [Streptococcus sobrinus strain NIDR 6715-15]
MYDYLKGILTKITAKYIVVEAGGLGYMVNVANPYSFSNQMHQDIQIYLHHVVREDAQLLYGFHSEEEKAVFLNLISVSGI
GPTTALAIVAVDDNEGLVAAIDNSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQAAGKASPQAQSSNQNLDEAMEALQ
ALGYKASELKKVRAFFEGTDETAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=254146 DLJ52_RS10080 WP_019769153.1 2074529..2075119(-) (ruvA) [Streptococcus sobrinus strain NIDR 6715-15]
ATGTACGACTATCTCAAAGGAATTTTAACCAAAATTACAGCCAAGTATATCGTGGTCGAGGCTGGTGGCCTGGGCTATAT
GGTTAATGTTGCCAACCCCTACTCTTTCTCCAACCAGATGCATCAGGACATCCAGATCTATCTCCACCATGTGGTGCGAG
AGGATGCCCAGCTTCTCTATGGGTTTCATAGCGAAGAGGAGAAGGCCGTTTTCCTCAATCTGATTTCTGTTTCAGGTATC
GGTCCAACAACGGCCTTAGCTATCGTTGCTGTTGATGATAATGAGGGCTTGGTTGCCGCTATTGATAATAGCGACATCAA
GTACCTGACTAAATTTCCTAAGATTGGCAAGAAAACTGCACAGCAGATGGTTTTGGACCTAGCTGGTAAGTTTGTGGAAG
TGCCTCAAGCGGCTGGCAAGGCAAGTCCACAGGCCCAAAGTAGCAATCAAAATCTGGACGAAGCCATGGAAGCCCTCCAG
GCACTGGGCTACAAGGCCAGCGAACTCAAGAAAGTCCGTGCCTTCTTTGAAGGAACCGACGAAACCGCAGAGAATTATAT
CAAGTCAGCCCTGAAAATGCTGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

68

100

0.694
  ruvA Streptococcus pneumoniae R6

68.528

100

0.689
  ruvA Streptococcus pneumoniae D39

68.528

100

0.689
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.394

100

0.418