Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS550_RS08335 Genome accession   NZ_CP024595
Coordinates   1857951..1858691 (-) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain KCOM 3001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1852951..1863691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS550_RS08320 (CS550_08240) - 1853830..1854411 (+) 582 WP_004583806.1 RNA polymerase sigma factor -
  CS550_RS10690 - 1854509..1854649 (+) 141 WP_021663364.1 hypothetical protein -
  CS550_RS08325 (CS550_08245) - 1854831..1855733 (+) 903 WP_077082938.1 nucleotidyltransferase -
  CS550_RS08330 (CS550_08250) - 1855752..1857821 (+) 2070 WP_099779496.1 M13 family metallopeptidase -
  CS550_RS08335 (CS550_08255) comF 1857951..1858691 (-) 741 WP_005875257.1 ComF family protein Machinery gene
  CS550_RS08340 (CS550_08260) - 1858675..1859160 (-) 486 WP_097652255.1 regulatory protein RecX -
  CS550_RS08345 (CS550_08265) prmC 1859157..1860038 (-) 882 WP_099779497.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CS550_RS08350 (CS550_08270) ribD 1860063..1861055 (+) 993 WP_021680230.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS550_RS11545 - 1861139..1861300 (+) 162 WP_394365323.1 DUF1661 domain-containing protein -
  CS550_RS08355 (CS550_08275) aspS 1861486..1863249 (+) 1764 WP_099779498.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=254148 CS550_RS08335 WP_005875257.1 1857951..1858691(-) (comF) [Porphyromonas gingivalis strain KCOM 3001]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254148 CS550_RS08335 WP_005875257.1 1857951..1858691(-) (comF) [Porphyromonas gingivalis strain KCOM 3001]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTACTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTATTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment