Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   DLJ52_RS04555 Genome accession   NZ_CP029559
Coordinates   950587..951330 (+) Length   247 a.a.
NCBI ID   WP_109982563.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 945587..956330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS10610 - 945758..945994 (+) 237 WP_080567358.1 DUF2809 domain-containing protein -
  DLJ52_RS04535 (DLJ52_04535) - 946934..947773 (+) 840 WP_002963413.1 patatin family protein -
  DLJ52_RS04540 (DLJ52_04540) - 947978..948913 (+) 936 Protein_845 amidohydrolase family protein -
  DLJ52_RS04545 (DLJ52_04545) - 949030..949556 (+) 527 Protein_846 YbaK/EbsC family protein -
  DLJ52_RS04550 (DLJ52_04550) - 949969..950472 (+) 504 WP_019777342.1 phosphatase PAP2 family protein -
  DLJ52_RS04555 (DLJ52_04555) comE/blpR 950587..951330 (+) 744 WP_109982563.1 response regulator transcription factor Regulator
  DLJ52_RS04560 (DLJ52_04560) - 951333..952679 (+) 1347 WP_002998464.1 GHKL domain-containing protein -
  DLJ52_RS04565 (DLJ52_04565) comB/nlmE 952797..953570 (-) 774 WP_019770708.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  DLJ52_RS04570 (DLJ52_04570) comA/nlmT 953583..955730 (-) 2148 WP_021673784.1 peptide cleavage/export ABC transporter Regulator
  DLJ52_RS04575 (DLJ52_04575) - 956044..956238 (+) 195 WP_019771729.1 bacteriocin class II family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28615.65 Da        Isoelectric Point: 6.7636

>NTDB_id=254095 DLJ52_RS04555 WP_109982563.1 950587..951330(+) (comE/blpR) [Streptococcus sobrinus strain NIDR 6715-15]
MLYIYALEDDFKQQARIESAIQAIATAETMDYELSVSGRPDQLMESLEGKGSQYVFFLDIDLNGQKQKGFEVAREIRARD
AQALIVFVTHYSNFMPLTFQYQVSALDFIDKELPEEEFRQRLANILRHAQDNLGKNLAEASFLFENEQFRIQMPYNEIYF
IEASSSPHKIILHGRKDYMEFYGTLAEVDKATDRFIRVHRSISLNPANVAKVDKSQRLAYFPNGETCIIAKTKMRPLANA
LKKLHRR

Nucleotide


Download         Length: 744 bp        

>NTDB_id=254095 DLJ52_RS04555 WP_109982563.1 950587..951330(+) (comE/blpR) [Streptococcus sobrinus strain NIDR 6715-15]
TTGTTATATATCTATGCCTTAGAAGACGATTTTAAACAGCAAGCTAGGATTGAAAGTGCTATTCAGGCAATTGCGACAGC
AGAAACTATGGACTACGAGCTCTCGGTTTCTGGAAGGCCTGATCAATTGATGGAAAGCCTAGAAGGCAAGGGTAGCCAGT
ATGTTTTCTTTCTTGATATTGATTTGAACGGTCAGAAGCAGAAAGGGTTTGAGGTTGCCAGAGAAATCCGAGCTAGGGAT
GCTCAGGCGCTGATTGTTTTTGTAACCCACTATTCCAATTTCATGCCTCTAACCTTCCAGTATCAGGTTTCTGCTCTGGA
TTTCATTGATAAGGAATTGCCAGAAGAAGAATTCAGGCAGAGATTGGCTAATATTTTACGGCATGCTCAGGATAATCTTG
GCAAGAATCTAGCTGAGGCTTCCTTTCTCTTTGAAAATGAGCAGTTTCGTATTCAGATGCCCTACAATGAAATTTATTTT
ATTGAGGCATCCTCCAGTCCCCACAAAATCATTTTGCATGGGCGCAAGGATTATATGGAATTTTACGGTACCCTAGCAGA
GGTTGATAAAGCAACAGATCGCTTTATCCGGGTCCATCGATCAATCAGTCTTAATCCAGCTAATGTGGCTAAGGTTGATA
AGAGCCAACGTCTGGCTTACTTTCCAAATGGTGAAACTTGCATTATCGCCAAAACCAAGATGCGCCCCTTAGCCAATGCT
TTGAAGAAATTACATAGGAGGTAA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(151-241)

Response regulator receiver domain (Response_reg)

(9-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

45.188

96.761

0.437
  comE/comE1 Streptococcus equinus JB1

39.918

98.381

0.393
  comE/comE2 Streptococcus equinus JB1

36.032

100

0.36