Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | CRH16_RS10235 | Genome accession | NZ_CP024412 |
| Coordinates | 2003559..2004686 (+) | Length | 375 a.a. |
| NCBI ID | WP_112063141.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain SH0104 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1998559..2009686
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRH16_RS10205 | - | 1999395..1999664 (+) | 270 | WP_010787344.1 | type II toxin-antitoxin system RelE family toxin | - |
| CRH16_RS10210 | - | 1999692..2000087 (+) | 396 | WP_010787343.1 | helix-turn-helix domain-containing protein | - |
| CRH16_RS11550 | - | 2000308..2000466 (+) | 159 | WP_010787342.1 | hypothetical protein | - |
| CRH16_RS10215 | - | 2000889..2001089 (-) | 201 | WP_112063140.1 | hypothetical protein | - |
| CRH16_RS10220 | - | 2001273..2001557 (-) | 285 | WP_016528596.1 | hypothetical protein | - |
| CRH16_RS11665 | - | 2001538..2001681 (-) | 144 | WP_010787341.1 | hypothetical protein | - |
| CRH16_RS10225 | rfaD | 2001773..2002699 (-) | 927 | WP_021110191.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| CRH16_RS10230 | def | 2002711..2003223 (-) | 513 | WP_005712670.1 | peptide deformylase | - |
| CRH16_RS10235 | dprA | 2003559..2004686 (+) | 1128 | WP_112063141.1 | DNA-processing protein DprA | Machinery gene |
| CRH16_RS10240 | - | 2004739..2005575 (+) | 837 | WP_010787337.1 | heme/hemin ABC transporter substrate-binding protein | - |
| CRH16_RS10245 | - | 2005575..2006561 (+) | 987 | WP_010787336.1 | FecCD family ABC transporter permease | - |
| CRH16_RS10250 | - | 2006561..2007349 (+) | 789 | WP_035495893.1 | heme ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 41767.75 Da Isoelectric Point: 5.2469
>NTDB_id=253425 CRH16_RS10235 WP_112063141.1 2003559..2004686(+) (dprA) [Glaesserella parasuis strain SH0104]
MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYDKTALKQMGWNERQIQRWFNPEHKWIDQALQWAEQDQQRILTLF
DEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKYQLAVTSGLAIGIDGFCHQRAVN
ENGITIAVLGSGLDQVYPARHKKLAEQIVDTSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITAR
YALEQGREVFALPNSVQNPYSEGCHKLIKEGALLVENIDDILEAIAWQRQSVHIQPSLFDTKPKQAVKSDPKFAKNLPEL
TACQQQLFEQISLEPISVDDLAKATDMAVETALIELLNLELLGVVKQVSGGYVIT
MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYDKTALKQMGWNERQIQRWFNPEHKWIDQALQWAEQDQQRILTLF
DEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKYQLAVTSGLAIGIDGFCHQRAVN
ENGITIAVLGSGLDQVYPARHKKLAEQIVDTSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITAR
YALEQGREVFALPNSVQNPYSEGCHKLIKEGALLVENIDDILEAIAWQRQSVHIQPSLFDTKPKQAVKSDPKFAKNLPEL
TACQQQLFEQISLEPISVDDLAKATDMAVETALIELLNLELLGVVKQVSGGYVIT
Nucleotide
Download Length: 1128 bp
>NTDB_id=253425 CRH16_RS10235 WP_112063141.1 2003559..2004686(+) (dprA) [Glaesserella parasuis strain SH0104]
ATGACACATCTCACAAAATTATTAGCCCTGTTACAAGTGCCACAGCTTGGCGCGCAACGTATCGGGCGGTTACTCTCGGA
AGTGGACTTTGGCGAATTTTGTCAATATGACAAAACCGCATTAAAGCAAATGGGCTGGAATGAACGGCAAATTCAGCGTT
GGTTTAATCCTGAGCATAAATGGATCGATCAGGCGTTGCAATGGGCGGAACAGGATCAGCAACGGATTTTAACTTTATTT
GACGAAGATTATCCTTTCTTGCTGAAGCAGATCAGCACCGCTCCTCCAGTGCTTTTTGTGCGGGGGAATGTTGAAAGTTT
ATCGTTACCGCAGATAGCCATCGTTGGCAGTCGAGATTATTCCCACTATGGTGAACACTGGGCTGGGCATTTTTCGGCGG
AATTAGTGAAATATCAGCTTGCTGTCACCAGTGGCTTAGCCATAGGCATAGATGGATTTTGCCATCAACGTGCGGTCAAT
GAGAATGGAATTACCATTGCGGTTTTGGGCAGTGGGCTAGACCAAGTCTATCCTGCCCGCCACAAAAAACTTGCGGAACA
AATCGTTGATACAAGCGGTGCATTAGTGTCGGAATTTTTCCCTAGCCAGCCACCGATTGCTGAGAATTTCCCTAGACGAA
ATCGTATTATCAGCGGATTATCGCTAGGCACATTGGTTATTGAAGCCACGGTGAACAGTGGCTCGCTCATCACTGCTCGT
TATGCGTTAGAGCAAGGACGAGAAGTTTTTGCATTGCCGAACTCAGTACAAAACCCGTATAGCGAAGGGTGCCATAAATT
GATTAAAGAAGGGGCATTGCTGGTTGAAAATATTGATGACATTTTAGAAGCGATTGCGTGGCAACGGCAGTCAGTGCATA
TTCAACCAAGTCTATTTGATACGAAACCTAAACAAGCGGTGAAATCCGACCCTAAATTTGCAAAAAATCTACCTGAACTG
ACCGCTTGTCAGCAACAATTGTTTGAACAGATTAGCCTTGAGCCGATCAGCGTTGATGATCTTGCCAAAGCAACAGATAT
GGCAGTAGAAACCGCATTGATTGAGCTGCTGAATTTGGAGTTGTTGGGCGTAGTGAAGCAGGTGAGTGGGGGGTATGTAA
TCACTTGA
ATGACACATCTCACAAAATTATTAGCCCTGTTACAAGTGCCACAGCTTGGCGCGCAACGTATCGGGCGGTTACTCTCGGA
AGTGGACTTTGGCGAATTTTGTCAATATGACAAAACCGCATTAAAGCAAATGGGCTGGAATGAACGGCAAATTCAGCGTT
GGTTTAATCCTGAGCATAAATGGATCGATCAGGCGTTGCAATGGGCGGAACAGGATCAGCAACGGATTTTAACTTTATTT
GACGAAGATTATCCTTTCTTGCTGAAGCAGATCAGCACCGCTCCTCCAGTGCTTTTTGTGCGGGGGAATGTTGAAAGTTT
ATCGTTACCGCAGATAGCCATCGTTGGCAGTCGAGATTATTCCCACTATGGTGAACACTGGGCTGGGCATTTTTCGGCGG
AATTAGTGAAATATCAGCTTGCTGTCACCAGTGGCTTAGCCATAGGCATAGATGGATTTTGCCATCAACGTGCGGTCAAT
GAGAATGGAATTACCATTGCGGTTTTGGGCAGTGGGCTAGACCAAGTCTATCCTGCCCGCCACAAAAAACTTGCGGAACA
AATCGTTGATACAAGCGGTGCATTAGTGTCGGAATTTTTCCCTAGCCAGCCACCGATTGCTGAGAATTTCCCTAGACGAA
ATCGTATTATCAGCGGATTATCGCTAGGCACATTGGTTATTGAAGCCACGGTGAACAGTGGCTCGCTCATCACTGCTCGT
TATGCGTTAGAGCAAGGACGAGAAGTTTTTGCATTGCCGAACTCAGTACAAAACCCGTATAGCGAAGGGTGCCATAAATT
GATTAAAGAAGGGGCATTGCTGGTTGAAAATATTGATGACATTTTAGAAGCGATTGCGTGGCAACGGCAGTCAGTGCATA
TTCAACCAAGTCTATTTGATACGAAACCTAAACAAGCGGTGAAATCCGACCCTAAATTTGCAAAAAATCTACCTGAACTG
ACCGCTTGTCAGCAACAATTGTTTGAACAGATTAGCCTTGAGCCGATCAGCGTTGATGATCTTGCCAAAGCAACAGATAT
GGCAGTAGAAACCGCATTGATTGAGCTGCTGAATTTGGAGTTGTTGGGCGTAGTGAAGCAGGTGAGTGGGGGGTATGTAA
TCACTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Glaesserella parasuis strain SC1401 |
97.867 |
100 |
0.979 |
| dprA | Haemophilus influenzae Rd KW20 |
53.235 |
90.667 |
0.483 |
| dprA | Vibrio campbellii strain DS40M4 |
46.917 |
99.467 |
0.467 |
| dprA | Vibrio cholerae strain A1552 |
44.149 |
100 |
0.443 |
| dprA | Legionella pneumophila strain ERS1305867 |
38.624 |
100 |
0.389 |
| dprA | Neisseria gonorrhoeae MS11 |
43.312 |
83.733 |
0.363 |