Detailed information NTG0025333

Bioinformatically predicted

Overview

• Name: pilH
• Type: Machinery gene
• Locus tag: CYB_RS09230
• Genome accession: NC_007776
• Coordinates: 2029963..2030340 (-)
• Length: 125 a.a.
• NCBI ID: WP_011433532.1
• Uniprot ID: -
• Organism: Synechococcus sp. JA-2-3B'a(2-13)
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2024963..2035340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CYB_RS09215 (CYB_1935)	-	2026183..2028675 (-)	2493	WP_011433529.1	methyl-accepting chemotaxis protein	-
CYB_RS09220 (CYB_1936)	-	2028967..2029485 (-)	519	WP_011433530.1	CheW domain-containing protein	-
CYB_RS09225 (CYB_1937)	pilH	2029601..2029966 (-)	366	WP_011433531.1	response regulator transcription factor	Machinery gene
CYB_RS09230 (CYB_1938)	pilH	2029963..2030340 (-)	378	WP_011433532.1	response regulator	Machinery gene
CYB_RS09235 (CYB_1939)	-	2030529..2031671 (-)	1143	WP_011433533.1	response regulator	-
CYB_RS09240 (CYB_1940)	-	2031905..2032189 (+)	285	WP_011433534.1	YggT family protein	-
CYB_RS09245 (CYB_1941)	-	2032212..2033330 (-)	1119	WP_011433535.1	electron transfer flavoprotein subunit alpha/FixB family protein	-
CYB_RS09250 (CYB_1942)	-	2033503..2034327 (-)	825	WP_011433536.1	electron transfer flavoprotein subunit beta/FixA family protein	-

Sequence

Protein

• Length: 125 a.a.
• Molecular weight: 14348.48 Da
• Isoelectric Point: 5.7828

>NTDB_id=25333 CYB_RS09230 WP_011433532.1 2029963..2030340(-) (pilH) [Synechococcus sp. JA-2-3B'a(2-13)]
MSKVLVVDDSRTYLETISSLLSENGLEVSTATDGVEAMECIRQQKPDVVVLDIVMPRMNGYEVCREVKGDESTKHIRIVM
CSTKDQTFDIEWARRNQADAYVTKPFKPQELLATIKHQLREMNRK

Nucleotide

• Length: 378 bp

>NTDB_id=25333 CYB_RS09230 WP_011433532.1 2029963..2030340(-) (pilH) [Synechococcus sp. JA-2-3B'a(2-13)]
ATGAGCAAAGTGCTGGTGGTGGATGACAGCCGTACCTACCTGGAGACCATTTCCAGCTTGCTTTCCGAGAACGGTTTGGA
AGTCTCCACAGCAACAGACGGCGTAGAGGCAATGGAGTGCATTCGCCAGCAGAAGCCTGATGTGGTGGTGCTGGATATTG
TCATGCCGCGCATGAACGGCTACGAGGTATGCCGGGAAGTGAAGGGGGATGAAAGTACCAAACACATTCGCATCGTCATG
TGTTCCACCAAAGACCAGACCTTTGATATCGAGTGGGCCAGGCGCAACCAGGCGGATGCCTATGTAACCAAGCCCTTTAA
GCCCCAAGAGCTCCTGGCGACCATCAAACATCAATTGCGGGAGATGAATCGGAAATGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (4-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilH	Synechocystis sp. PCC 6803	54.167	96	0.52
pilG	Acinetobacter baumannii strain A118	42.735	93.6	0.4
vicR	Streptococcus mutans UA159	40	96	0.384
micA	Streptococcus pneumoniae Cp1015	38.333	96	0.368