Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | CYB_RS09225 | Genome accession | NC_007776 |
| Coordinates | 2029601..2029966 (-) | Length | 121 a.a. |
| NCBI ID | WP_011433531.1 | Uniprot ID | Q2JKA3 |
| Organism | Synechococcus sp. JA-2-3B'a(2-13) | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2024601..2034966
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYB_RS09215 (CYB_1935) | - | 2026183..2028675 (-) | 2493 | WP_011433529.1 | methyl-accepting chemotaxis protein | - |
| CYB_RS09220 (CYB_1936) | - | 2028967..2029485 (-) | 519 | WP_011433530.1 | CheW domain-containing protein | - |
| CYB_RS09225 (CYB_1937) | pilH | 2029601..2029966 (-) | 366 | WP_011433531.1 | response regulator transcription factor | Machinery gene |
| CYB_RS09230 (CYB_1938) | pilH | 2029963..2030340 (-) | 378 | WP_011433532.1 | response regulator | Machinery gene |
| CYB_RS09235 (CYB_1939) | - | 2030529..2031671 (-) | 1143 | WP_011433533.1 | response regulator | - |
| CYB_RS09240 (CYB_1940) | - | 2031905..2032189 (+) | 285 | WP_011433534.1 | YggT family protein | - |
| CYB_RS09245 (CYB_1941) | - | 2032212..2033330 (-) | 1119 | WP_011433535.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| CYB_RS09250 (CYB_1942) | - | 2033503..2034327 (-) | 825 | WP_011433536.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13686.87 Da Isoelectric Point: 4.7399
>NTDB_id=25332 CYB_RS09225 WP_011433531.1 2029601..2029966(-) (pilH) [Synechococcus sp. JA-2-3B'a(2-13)]
MSRVLVVEDSQSQREMISKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMNGYEVCRLLKADPLTQKTPIVM
CSSKGEEFDRYWGIRQGADAYIAKPFQPQELVGTIKQLLRG
MSRVLVVEDSQSQREMISKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMNGYEVCRLLKADPLTQKTPIVM
CSSKGEEFDRYWGIRQGADAYIAKPFQPQELVGTIKQLLRG
Nucleotide
Download Length: 366 bp
>NTDB_id=25332 CYB_RS09225 WP_011433531.1 2029601..2029966(-) (pilH) [Synechococcus sp. JA-2-3B'a(2-13)]
ATGAGTCGCGTTTTGGTGGTGGAAGATAGCCAATCCCAGCGGGAGATGATCAGCAAGCTGCTGCAGGAAAACGGCTTCGA
GGTGATGACTGTGGAAGACGGGGTGGAGGCCGTAGAGGCGGTGAAGCAAAACAAACCCGACCTGATCGTGCTGGACATCG
TCATGCCGCGCATGAACGGCTATGAGGTGTGCCGTCTTCTCAAGGCCGACCCTCTCACCCAAAAAACGCCCATCGTCATG
TGTTCTTCCAAGGGCGAAGAATTTGACCGCTACTGGGGGATCCGCCAGGGAGCGGATGCCTACATTGCCAAGCCTTTCCA
GCCCCAGGAACTGGTGGGTACGATTAAGCAATTACTGAGAGGCTGA
ATGAGTCGCGTTTTGGTGGTGGAAGATAGCCAATCCCAGCGGGAGATGATCAGCAAGCTGCTGCAGGAAAACGGCTTCGA
GGTGATGACTGTGGAAGACGGGGTGGAGGCCGTAGAGGCGGTGAAGCAAAACAAACCCGACCTGATCGTGCTGGACATCG
TCATGCCGCGCATGAACGGCTATGAGGTGTGCCGTCTTCTCAAGGCCGACCCTCTCACCCAAAAAACGCCCATCGTCATG
TGTTCTTCCAAGGGCGAAGAATTTGACCGCTACTGGGGGATCCGCCAGGGAGCGGATGCCTACATTGCCAAGCCTTTCCA
GCCCCAGGAACTGGTGGGTACGATTAAGCAATTACTGAGAGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
70.248 |
100 |
0.702 |
| chpA | Acinetobacter baumannii strain A118 |
41.379 |
95.868 |
0.397 |
| pilG | Acinetobacter baumannii strain A118 |
40 |
95.041 |
0.38 |
| micA | Streptococcus pneumoniae Cp1015 |
37.5 |
99.174 |
0.372 |