Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DF184_RS00755 Genome accession   NZ_CP029398
Coordinates   117649..118056 (+) Length   135 a.a.
NCBI ID   WP_109371023.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112649..123056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS00730 (DF184_00730) - 114050..114415 (+) 366 WP_002936568.1 DUF1033 family protein -
  DF184_RS00735 (DF184_00735) - 114450..115400 (-) 951 WP_109371021.1 S66 peptidase family protein -
  DF184_RS00740 (DF184_00740) comGA 115486..116436 (+) 951 WP_024410900.1 competence type IV pilus ATPase ComGA Machinery gene
  DF184_RS00745 (DF184_00745) comGB 116348..117385 (+) 1038 WP_275425327.1 competence type IV pilus assembly protein ComGB Machinery gene
  DF184_RS00750 (DF184_00750) comGC 117387..117668 (+) 282 WP_024385124.1 competence type IV pilus major pilin ComGC Machinery gene
  DF184_RS00755 (DF184_00755) comGD 117649..118056 (+) 408 WP_109371023.1 competence type IV pilus minor pilin ComGD Machinery gene
  DF184_RS00760 (DF184_00760) comGE 118028..118321 (+) 294 WP_044752980.1 competence type IV pilus minor pilin ComGE Machinery gene
  DF184_RS00765 (DF184_00765) comGF/cglF 118308..118742 (+) 435 WP_052506926.1 competence type IV pilus minor pilin ComGF Machinery gene
  DF184_RS00770 (DF184_00770) comGG 118720..119130 (+) 411 WP_109371025.1 competence type IV pilus minor pilin ComGG -
  DF184_RS00775 (DF184_00775) comGH 119187..120140 (+) 954 WP_109371027.1 class I SAM-dependent methyltransferase Machinery gene
  DF184_RS00780 (DF184_00780) - 120190..121377 (+) 1188 WP_014637319.1 acetate kinase -
  DF184_RS00785 (DF184_00785) - 121638..122189 (+) 552 WP_014637320.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15267.39 Da        Isoelectric Point: 9.3255

>NTDB_id=253133 DF184_RS00755 WP_109371023.1 117649..118056(+) (comGD) [Streptococcus suis strain HN105]
MLRRKNKAFTLFESLLTLFVISFLAISLSGTVQTAFQSVQEEIFLWEFEGIYKDSQKLAASSHQTVNLAIGGQEVTNGYQ
AVEVPRNVEVLEGKTITFEENGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=253133 DF184_RS00755 WP_109371023.1 117649..118056(+) (comGD) [Streptococcus suis strain HN105]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTAACCTTATTTGTCATCAGCTTTCTGGCAATCAG
CCTGTCGGGAACGGTGCAAACGGCCTTTCAGTCTGTTCAGGAAGAGATTTTTCTCTGGGAATTTGAGGGCATCTATAAAG
ACAGTCAGAAACTGGCAGCTAGTTCCCACCAAACAGTGAACCTTGCTATTGGCGGACAGGAAGTGACCAATGGTTATCAG
GCTGTAGAGGTACCCAGAAATGTAGAAGTATTGGAAGGGAAGACCATCACATTTGAAGAAAATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

47.287

95.556

0.452
  comGD Streptococcus mutans UA140

47.287

95.556

0.452
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363