Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CSW64_RS14020 Genome accession   NZ_CP024201
Coordinates   2932699..2933208 (-) Length   169 a.a.
NCBI ID   WP_099622696.1    Uniprot ID   A0A2D2AZM8
Organism   Caulobacter mirabilis strain FWC 38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2927699..2938208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSW64_RS14000 (CSW64_13990) - 2928115..2928630 (+) 516 WP_099622692.1 superoxide dismutase family protein -
  CSW64_RS14005 (CSW64_13995) - 2928640..2929563 (-) 924 WP_099622693.1 DMT family transporter -
  CSW64_RS14010 (CSW64_14000) - 2929731..2930831 (-) 1101 WP_099622694.1 serine hydrolase domain-containing protein -
  CSW64_RS14015 (CSW64_14005) - 2930932..2932641 (-) 1710 WP_099622695.1 hypothetical protein -
  CSW64_RS14020 (CSW64_14010) ssb 2932699..2933208 (-) 510 WP_099622696.1 single-stranded DNA-binding protein Machinery gene
  CSW64_RS14025 (CSW64_14015) - 2933396..2933782 (-) 387 WP_099622697.1 hypothetical protein -
  CSW64_RS14030 (CSW64_14020) - 2933815..2934480 (-) 666 WP_099622698.1 hypothetical protein -
  CSW64_RS14035 (CSW64_14025) - 2934526..2937447 (-) 2922 WP_099622699.1 hypothetical protein -
  CSW64_RS14040 (CSW64_14030) pseH 2937521..2938075 (-) 555 WP_099622700.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18193.03 Da        Isoelectric Point: 5.3476

>NTDB_id=252869 CSW64_RS14020 WP_099622696.1 2932699..2933208(-) (ssb) [Caulobacter mirabilis strain FWC 38]
MAGSVNKVILVGNLGADPEIRTLNSGDRVANLRLATSETWRDRASGERKERTEWHRVVIFNDNLVKVAEQYLKKGSTVYI
EGALQTRKWTDQSGQEKYSTEIVLQKFRGELTMLGGRGDGGGAMRDDGDFGGGYSGGGGSFGGSSGGGRSQPSGPRENFS
ADLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=252869 CSW64_RS14020 WP_099622696.1 2932699..2933208(-) (ssb) [Caulobacter mirabilis strain FWC 38]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAACCTGGGCGCCGATCCCGAAATCCGCACCCTGAACTCCGGCGA
CCGGGTCGCCAATCTGCGGCTGGCCACCTCCGAGACCTGGCGCGACCGCGCCTCGGGCGAGCGCAAGGAGCGCACCGAGT
GGCACCGGGTGGTCATCTTCAACGACAACCTGGTCAAGGTCGCCGAGCAGTACCTGAAGAAGGGCTCGACGGTTTACATC
GAGGGGGCCCTGCAGACCCGCAAGTGGACCGACCAATCGGGCCAGGAGAAGTACTCGACCGAGATCGTGCTGCAGAAGTT
CCGCGGCGAGCTGACCATGCTGGGCGGCCGCGGCGACGGCGGCGGCGCGATGCGCGACGACGGCGACTTCGGCGGCGGCT
ACTCGGGCGGCGGCGGTTCGTTCGGCGGCTCCAGCGGCGGCGGTCGCAGCCAGCCGTCCGGCCCGCGTGAGAACTTCTCG
GCGGACCTGGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D2AZM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.705

100

0.538
  ssb Glaesserella parasuis strain SC1401

45.96

100

0.538
  ssb Neisseria gonorrhoeae MS11

41.667

100

0.444
  ssb Neisseria meningitidis MC58

41.111

100

0.438

Multiple sequence alignment