Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KSH_RS10910 Genome accession   NZ_CP024180
Coordinates   2447367..2448860 (+) Length   497 a.a.
NCBI ID   WP_100285341.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2442367..2453860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS10880 (KSH_12145) - 2442936..2443541 (+) 606 WP_100285337.1 antibiotic biosynthesis monooxygenase -
  KSH_RS10885 (KSH_12150) - 2443538..2443921 (-) 384 WP_157819393.1 HNH endonuclease -
  KSH_RS10890 (KSH_12155) - 2444028..2444609 (+) 582 WP_100285338.1 DUF4442 domain-containing protein -
  KSH_RS10895 (KSH_12160) - 2444620..2445225 (-) 606 WP_100285339.1 class I SAM-dependent methyltransferase -
  KSH_RS10900 (KSH_12165) - 2445243..2445566 (-) 324 WP_036597283.1 hypothetical protein -
  KSH_RS10905 (KSH_12170) hemN 2445680..2447158 (-) 1479 WP_100285340.1 oxygen-independent coproporphyrinogen III oxidase -
  KSH_RS10910 (KSH_12175) comM 2447367..2448860 (+) 1494 WP_100285341.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KSH_RS10915 (KSH_12180) - 2448900..2449460 (-) 561 WP_076775610.1 DUF4385 domain-containing protein -
  KSH_RS10920 (KSH_12185) - 2449447..2450181 (-) 735 WP_062333128.1 phosphoglycolate phosphatase -
  KSH_RS10925 (KSH_12190) phoU 2450322..2451092 (-) 771 WP_076775614.1 phosphate signaling complex protein PhoU -
  KSH_RS10930 (KSH_12195) pstS 2451440..2452444 (+) 1005 WP_100285342.1 phosphate ABC transporter substrate-binding protein PstS -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53915.40 Da        Isoelectric Point: 8.0023

>NTDB_id=252807 KSH_RS10910 WP_100285341.1 2447367..2448860(+) (comM) [Moraxella osloensis strain KSH]
MSFAQVYTRSVVGLNAPSVMVEVHLSQGLPAVTMVGLPEAAVRESKDRVRSAIINSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASGQIDETVLAQYEFIGELALNGDLRGIAGALAVSRALKVDRRTLIVPKDNADEAVKVDGVKVLQADTL
KAVCQHLMNEQQLSQAEHKTSYQSANYQLDLADVKGQHQARRALEIAAAGGHSLLFCGSPGTGKTLMASRLPTILPPLND
HEALEVASIYSIANSDYDYGTRPFRQVHHTTSAVALVGGGSSPKPGEITLANRGVLFLDEIPEFDRKVLEVLRQPIENKE
IVISRANSQVRFPANFQLVAAMNPCPCGYYGDKSGRCQCRPEQIKRYQEKLSGPLLDRIDLHITVPALPASDLQSAQKGE
SSAVVRERVIQAYQRQQARQGKANNELSPSELDQFAPLGDAESRILAMAQSRLNLSARGYHRVLRVARTIADLAGSEAIQ
TAHLTEALSYRSQLTNA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=252807 KSH_RS10910 WP_100285341.1 2447367..2448860(+) (comM) [Moraxella osloensis strain KSH]
ATGTCGTTTGCTCAAGTATATACGCGCTCGGTGGTGGGTTTAAACGCGCCAAGCGTGATGGTAGAAGTACATTTATCGCA
AGGATTGCCTGCAGTCACCATGGTTGGCTTACCCGAAGCAGCGGTGCGCGAGAGTAAAGATAGGGTGCGCTCTGCAATTA
TCAACTCGGGTTTTCAATTTCCCAATCGCAGATTAACCATCAACCTTGCGCCCGCGGATTTACCCAAAGATGGCGCACGG
CTTGATTTGCCGATTGCCATAGGTATCTTGGCAGCGAGTGGTCAAATTGATGAAACCGTGCTTGCGCAGTACGAGTTTAT
TGGCGAATTGGCGCTCAATGGCGATTTACGAGGGATTGCTGGGGCGTTGGCAGTATCACGGGCACTCAAGGTAGACCGGC
GCACCTTGATTGTTCCCAAAGACAATGCCGATGAAGCGGTCAAAGTCGATGGCGTGAAGGTGTTGCAAGCCGATACCCTC
AAAGCTGTGTGCCAACACTTGATGAATGAGCAACAACTCAGCCAAGCCGAGCATAAGACATCTTACCAATCAGCTAATTA
TCAGCTAGATTTAGCCGATGTCAAAGGACAACACCAAGCCAGACGTGCGTTAGAGATTGCGGCAGCAGGCGGACATTCGC
TACTATTTTGTGGCTCACCTGGGACAGGCAAAACCTTGATGGCATCTCGCCTACCCACCATTTTGCCACCGCTCAACGAC
CATGAAGCGCTTGAGGTTGCCAGTATTTACTCGATTGCCAACAGTGATTATGACTACGGCACACGCCCTTTTCGCCAAGT
CCATCATACTACCTCAGCGGTGGCGCTAGTGGGCGGCGGCTCATCGCCCAAACCCGGTGAAATCACGCTCGCCAATCGGG
GGGTGTTATTTTTGGATGAGATTCCAGAGTTTGATCGCAAGGTGCTTGAGGTACTCAGACAGCCCATTGAGAACAAAGAA
ATTGTCATCAGCCGTGCCAACTCTCAAGTGCGATTTCCTGCCAATTTTCAGCTGGTAGCAGCGATGAATCCCTGCCCCTG
TGGCTACTATGGGGATAAATCAGGTCGCTGCCAGTGCCGACCTGAGCAAATCAAACGCTATCAAGAAAAGCTATCAGGAC
CTTTGCTTGACCGTATTGATTTGCATATTACCGTGCCTGCGCTGCCTGCCAGTGATTTGCAGTCAGCACAGAAGGGTGAA
TCTTCTGCGGTAGTGCGTGAGCGGGTGATACAAGCCTATCAGCGTCAGCAAGCGAGACAAGGCAAAGCCAATAATGAACT
CTCCCCCAGTGAACTTGACCAATTTGCACCGCTTGGCGATGCAGAAAGTCGTATTTTAGCAATGGCACAAAGTCGGCTGA
ATCTGTCCGCTCGCGGCTATCATCGCGTCCTTCGCGTCGCCCGCACGATTGCGGACTTGGCAGGTAGTGAAGCAATCCAA
ACCGCGCATTTAACTGAGGCATTAAGTTATCGTAGTCAATTAACGAATGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.024

99.799

0.529
  comM Glaesserella parasuis strain SC1401

52.4

100

0.527
  comM Vibrio campbellii strain DS40M4

52.621

99.799

0.525
  comM Haemophilus influenzae Rd KW20

51.594

100

0.521
  comM Legionella pneumophila str. Paris

51.503

100

0.517
  comM Legionella pneumophila strain ERS1305867

51.503

100

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.732

100

0.453

Multiple sequence alignment