Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   YHS_RS11245 Genome accession   NZ_CP024176
Coordinates   2538346..2539839 (+) Length   497 a.a.
NCBI ID   WP_100274319.1    Uniprot ID   A0AAD0AX82
Organism   Moraxella osloensis strain YHS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2533346..2544839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS11220 (YHS_12360) - 2534454..2534837 (-) 384 WP_157797047.1 HNH endonuclease -
  YHS_RS11225 (YHS_12365) - 2534945..2535589 (+) 645 WP_198510445.1 DUF4442 domain-containing protein -
  YHS_RS11230 (YHS_12370) - 2535600..2536205 (-) 606 WP_100274316.1 class I SAM-dependent methyltransferase -
  YHS_RS11235 (YHS_12375) - 2536223..2536546 (-) 324 WP_036597283.1 hypothetical protein -
  YHS_RS11240 (YHS_12380) hemN 2536660..2538138 (-) 1479 WP_100274318.1 oxygen-independent coproporphyrinogen III oxidase -
  YHS_RS11245 (YHS_12385) comM 2538346..2539839 (+) 1494 WP_100274319.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  YHS_RS11250 (YHS_12390) - 2539879..2540439 (-) 561 WP_051500238.1 DUF4385 domain-containing protein -
  YHS_RS11255 (YHS_12395) - 2540426..2541160 (-) 735 WP_065253922.1 phosphoglycolate phosphatase -
  YHS_RS11260 (YHS_12400) phoU 2541299..2542069 (-) 771 WP_007116596.1 phosphate signaling complex protein PhoU -
  YHS_RS11265 (YHS_12405) pstS 2542417..2543421 (+) 1005 WP_100274320.1 phosphate ABC transporter substrate-binding protein PstS -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53924.37 Da        Isoelectric Point: 7.7435

>NTDB_id=252790 YHS_RS11245 WP_100274319.1 2538346..2539839(+) (comM) [Moraxella osloensis strain YHS]
MSFAQVYTRSVVGLNAPSVMVEVHLSQGLPAVTMVGLPEAAVRESKDRVRSAIINSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASGQIDETVLAQYEFIGELALNGDLRAIAGALAVSRALKAEQRTLIVPKDNADEAVKVDGVKVLQADTL
KAVCQHLMNEQQLSQAEHKASYQSANYQLDLADVKGQHQARRALEIAAAGGHSLLFCGSPGTGKTLMASRLPTILPPLND
HEALEVASIYSIANSDYDYGTRPFRQVHHTTSAVALVGGGSSPKPGEITLANRGVLFLDEIPEFDRKVLEVLRQPIENKE
IVISRANSQVRFPANFQLVAAMNPCPCGYYGDKSGRCQCRPEQIKRYQEKLSGPLLDRIDLHIIVPALPASDLQSAQRGE
SSAAVRERVIQAYQRQQARQGKANNELSPSELDQFAPLGDAESRILAMAQSRLNLSARGYHRVLRVARTIADLAGSDNIQ
TPHLTEALSYRSQLTNA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=252790 YHS_RS11245 WP_100274319.1 2538346..2539839(+) (comM) [Moraxella osloensis strain YHS]
ATGTCGTTTGCTCAAGTATATACGCGCTCGGTGGTAGGTTTAAATGCGCCAAGCGTGATGGTTGAAGTACATTTATCGCA
AGGATTGCCCGCAGTCACCATGGTCGGCTTGCCTGAGGCTGCGGTACGCGAGAGTAAAGATAGGGTGCGCTCTGCCATTA
TCAACTCGGGTTTTCAATTTCCCAATCGCAGATTAACCATCAACCTTGCACCCGCGGATTTACCCAAAGATGGCGCACGG
CTTGATTTGCCGATTGCCATAGGTATCTTGGCAGCGAGTGGTCAAATTGATGAAACCGTGCTTGCGCAGTACGAGTTTAT
TGGCGAATTGGCGCTCAATGGCGATTTACGAGCCATTGCTGGGGCGTTGGCAGTATCACGCGCGCTCAAGGCGGAGCAGC
GCACCTTGATTGTTCCCAAAGACAATGCCGATGAAGCGGTGAAAGTCGATGGCGTGAAGGTGTTGCAAGCCGATACCCTC
AAAGCTGTGTGCCAACACTTGATGAACGAGCAACAACTCAGCCAAGCCGAGCATAAGGCATCTTACCAATCAGCCAATTA
TCAGCTAGATTTAGCCGATGTCAAAGGACAACACCAAGCTAGACGTGCGCTAGAGATTGCGGCAGCGGGCGGACATTCGC
TACTATTTTGTGGCTCACCTGGGACAGGCAAAACCTTGATGGCATCTCGCCTACCCACCATTTTGCCACCGCTCAACGAC
CATGAAGCGCTCGAAGTTGCCAGTATTTACTCGATTGCCAACAGTGATTATGACTACGGCACACGCCCTTTTCGCCAAGT
CCATCATACTACTTCAGCAGTGGCGCTCGTGGGCGGCGGCTCATCGCCCAAACCCGGTGAAATCACGCTCGCCAATCGGG
GGGTGTTATTTTTGGATGAGATTCCAGAGTTTGATCGCAAGGTGCTTGAGGTACTCAGACAGCCCATCGAGAACAAAGAA
ATTGTCATCAGCCGTGCCAACTCTCAAGTACGCTTTCCCGCCAATTTTCAGCTGGTAGCAGCGATGAATCCCTGCCCCTG
TGGCTACTATGGGGATAAATCAGGTCGCTGCCAGTGCCGACCCGAGCAAATCAAACGCTATCAAGAAAAGCTATCAGGAC
CTTTGCTGGACCGTATTGATTTGCATATTATCGTGCCTGCCCTGCCTGCCAGTGATTTGCAGTCAGCACAGAGGGGTGAG
TCTTCTGCGGCAGTGCGTGAGCGGGTGATACAAGCCTATCAGCGCCAGCAAGCCAGACAGGGCAAAGCCAATAATGAACT
ATCCCCCAGTGAACTTGACCAATTTGCGCCGCTTGGCGATGCAGAAAGTCGTATTTTGGCAATGGCTCAAAGTCGGCTGA
ATCTGTCCGCTCGCGGCTATCATCGCGTCCTTCGCGTCGCCCGCACGATTGCGGACTTGGCAGGTAGTGACAATATTCAG
ACACCGCATTTAACCGAGGCACTCAGTTATCGTAGTCAATTAACGAATGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.427

99.799

0.533
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Vibrio campbellii strain DS40M4

53.024

99.799

0.529
  comM Haemophilus influenzae Rd KW20

51.793

100

0.523
  comM Legionella pneumophila str. Paris

51.102

100

0.513
  comM Legionella pneumophila strain ERS1305867

51.102

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.533

100

0.451

Multiple sequence alignment