Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DG474_RS08860 Genome accession   NZ_CP029257
Coordinates   1844364..1844957 (-) Length   197 a.a.
NCBI ID   WP_000273410.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1839364..1849957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS08830 (DG474_08975) - 1840140..1841084 (+) 945 WP_000815620.1 magnesium transporter CorA family protein -
  DG474_RS08835 (DG474_08980) - 1841096..1841773 (+) 678 WP_255778140.1 DUF1129 domain-containing protein -
  DG474_RS08840 (DG474_08985) - 1841789..1842136 (+) 348 WP_198464310.1 TfoX/Sxy family protein -
  DG474_RS08845 (DG474_08990) - 1842305..1843339 (+) 1035 WP_255778141.1 S66 peptidase family protein -
  DG474_RS08850 (DG474_08995) - 1843445..1843708 (+) 264 WP_000166112.1 SemiSWEET family transporter -
  DG474_RS08855 (DG474_09000) - 1843788..1844354 (-) 567 WP_000166572.1 DNA-3-methyladenine glycosylase I -
  DG474_RS08860 (DG474_09005) ruvA 1844364..1844957 (-) 594 WP_000273410.1 Holliday junction branch migration protein RuvA Machinery gene
  DG474_RS08865 (DG474_09010) - 1844970..1846202 (-) 1233 WP_255778146.1 MFS transporter -
  DG474_RS08870 (DG474_09015) - 1846375..1846872 (+) 498 WP_247942982.1 helix-turn-helix domain-containing protein -
  DG474_RS08875 (DG474_09020) hexB 1847024..1848973 (-) 1950 WP_255778148.1 DNA mismatch repair endonuclease MutL Machinery gene
  DG474_RS08880 (DG474_09025) - 1849182..1849622 (+) 441 WP_255778149.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21724.19 Da        Isoelectric Point: 6.2573

>NTDB_id=252567 DG474_RS08860 WP_000273410.1 1844364..1844957(-) (ruvA) [Streptococcus oralis strain CCUG 53468]
MYEYLKGIITKITAKYIVLEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=252567 DG474_RS08860 WP_000273410.1 1844364..1844957(-) (ruvA) [Streptococcus oralis strain CCUG 53468]
ATGTACGAATATCTAAAAGGAATCATTACCAAAATCACTGCTAAATACATCGTCCTAGAAGCTAACGGTATCGGCTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTGAATCAAGAAACTCAGATTTATGTGCACCAAGTTGTCCGTG
AGGATGCCCATCTGCTTTACGGCTTTCGTTCAGAAGACGAGAAGAAGCTCTTTCTCAGCTTGATTTCGGTCTCAGGGATT
GGTCCTGTGTCAGCTCTTGCTATTATCGCTGCCGATGACAATGCTGGCTTGGTTCAGGCGATCGAGACTAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAACAGATGGTGCTGGACTTGGAAGGCAAGGTAGTCGTGG
CTAGTGATGACCTTCCTGCCAAGGTGGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
TTGGCACTGGGCTACAAGGCAACCGAGCTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGACACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTAAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

97.462

100

0.975
  ruvA Streptococcus pneumoniae R6

96.954

100

0.97
  ruvA Streptococcus pneumoniae D39

96.954

100

0.97
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.777

100

0.426

Multiple sequence alignment