Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CSH50_RS00650 Genome accession   NZ_CP024159
Coordinates   144860..145525 (-) Length   221 a.a.
NCBI ID   WP_269779919.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain PtA1     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 145954..166019 144860..145525 flank 429


Gene organization within MGE regions


Location: 144860..166019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSH50_RS00650 comM 144860..145525 (-) 666 WP_269779919.1 ATP-binding protein Machinery gene
  CSH50_RS00655 - 145954..146307 (-) 354 WP_099430990.1 hypothetical protein -
  CSH50_RS00660 - 146430..147983 (+) 1554 WP_099430991.1 recombinase family protein -
  CSH50_RS00665 - 147983..148876 (+) 894 WP_099430992.1 ParB/RepB/Spo0J family partition protein -
  CSH50_RS00670 - 148873..149778 (+) 906 WP_099430993.1 plasmid partitioning protein RepB C-terminal domain-containing protein -
  CSH50_RS26710 - 150945..151151 (+) 207 WP_099430994.1 hypothetical protein -
  CSH50_RS00685 - 151440..152060 (+) 621 WP_157766860.1 TnsA endonuclease N-terminal domain-containing protein -
  CSH50_RS00690 - 152047..153942 (+) 1896 WP_099430996.1 DNA-binding domain-containing protein -
  CSH50_RS00695 - 153939..154817 (+) 879 WP_099430997.1 TniB family NTP-binding protein -
  CSH50_RS27070 - 154775..155905 (+) 1131 WP_099431281.1 TniQ family protein -
  CSH50_RS00705 - 156542..157348 (+) 807 WP_157766862.1 hypothetical protein -
  CSH50_RS00710 - 157668..159389 (-) 1722 WP_099430999.1 hypothetical protein -
  CSH50_RS00715 - 159856..160761 (+) 906 WP_099431000.1 hypothetical protein -
  CSH50_RS00720 - 160767..162776 (+) 2010 WP_099431001.1 hypothetical protein -
  CSH50_RS00725 - 162895..163704 (+) 810 WP_157766863.1 hypothetical protein -
  CSH50_RS00730 - 163701..164720 (-) 1020 WP_099431003.1 SIR2 family protein -
  CSH50_RS00735 - 164799..166019 (-) 1221 WP_157766864.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24576.20 Da        Isoelectric Point: 8.5126

>NTDB_id=252567 CSH50_RS00650 WP_269779919.1 144860..145525(-) (comM) [Pseudomonas mosselii strain PtA1]
MISFCPSGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLESGEIVVARAKDRVRFPARFQLVAAMNPCPCGYLGD
PTGRCRCSSEQVQRYRNKLSGPLLDRIDLHLTVARESTVLTHQPSGETSASVGQRVAEARALQQRRQGCANAFLDLKGLR
RHCPLEPVDQAWLEQACERLTLSLRAAHRLLKVARTLADLEGAQSIARAHLAEALQYRPGT

Nucleotide


Download         Length: 666 bp        

>NTDB_id=252567 CSH50_RS00650 WP_269779919.1 144860..145525(-) (comM) [Pseudomonas mosselii strain PtA1]
GTGATTTCTTTTTGTCCCAGCGGCAGCCGGCCGCAACCCGGCGAGATCACCCTGGCGCACCATGGCGTGCTGTTTCTCGA
CGAGCTGCCCGAGTTCGAACGGCGCGTGCTGGAGGTGCTGCGCGAACCGCTGGAGTCCGGCGAGATCGTGGTGGCCCGGG
CCAAGGACCGGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCCATGAACCCCTGCCCCTGTGGCTACCTGGGCGAC
CCCACCGGCCGCTGCCGGTGCAGCAGCGAGCAGGTCCAGCGCTACCGCAACAAGCTGTCCGGCCCGCTGCTCGACCGTAT
CGACCTGCACCTGACGGTGGCCCGGGAAAGTACCGTGCTGACCCACCAGCCCAGTGGCGAGACCAGCGCCAGCGTTGGCC
AGAGAGTGGCAGAGGCACGGGCGCTGCAGCAGCGCCGGCAGGGCTGCGCCAACGCCTTCCTCGACCTCAAGGGGCTGCGT
CGGCATTGCCCGCTGGAGCCGGTTGACCAGGCCTGGCTGGAGCAGGCCTGCGAACGGCTGACACTGTCGTTGCGGGCGGC
GCACCGGCTGCTGAAGGTCGCCCGCACGCTGGCGGACCTGGAGGGCGCGCAATCCATCGCCAGGGCGCACCTGGCGGAAG
CGTTGCAGTACCGACCCGGCACTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(5-117)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(126-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.489

100

0.525
  comM Glaesserella parasuis strain SC1401

52.252

100

0.525
  comM Vibrio cholerae strain A1552

51.364

99.548

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

50.45

100

0.507
  comM Vibrio campbellii strain DS40M4

50.455

99.548

0.502
  comM Legionella pneumophila str. Paris

45.455

99.548

0.452
  comM Legionella pneumophila strain ERS1305867

45.455

99.548

0.452

Multiple sequence alignment