Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DEH18_RS25605 Genome accession   NZ_CP029241
Coordinates   6479007..6480623 (-) Length   538 a.a.
NCBI ID   WP_159788586.1    Uniprot ID   -
Organism   Streptomyces sp. NHF165     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6474007..6485623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH18_RS25585 (DEH18_25950) - 6475051..6475551 (+) 501 Protein_5057 M23 family metallopeptidase -
  DEH18_RS25590 (DEH18_25955) - 6475842..6476402 (-) 561 WP_030892657.1 TetR/AcrR family transcriptional regulator -
  DEH18_RS25595 (DEH18_25960) whiG 6476556..6477410 (-) 855 WP_030892655.1 RNA polymerase sigma factor WhiG -
  DEH18_RS25600 (DEH18_25965) dprA 6477706..6479010 (-) 1305 WP_159788584.1 DNA-processing protein DprA -
  DEH18_RS25605 (DEH18_25970) comM 6479007..6480623 (-) 1617 WP_159788586.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DEH18_RS35170 - 6480623..6480991 (-) 369 Protein_5062 YraN family protein -
  DEH18_RS25615 (DEH18_25980) - 6481502..6481825 (-) 324 WP_030884234.1 DUF2469 domain-containing protein -
  DEH18_RS25620 (DEH18_25985) lepB 6481865..6482605 (-) 741 WP_187767498.1 signal peptidase I -
  DEH18_RS25625 (DEH18_25990) lepB 6482674..6483720 (-) 1047 WP_149562175.1 signal peptidase I -
  DEH18_RS25630 (DEH18_25995) lepB 6483614..6484549 (-) 936 WP_169729595.1 signal peptidase I -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 56437.69 Da        Isoelectric Point: 7.2209

>NTDB_id=252373 DEH18_RS25605 WP_159788586.1 6479007..6480623(-) (comM) [Streptomyces sp. NHF165]
MAFARTSSVALVGVEGVPVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGVPWPQKKLTVGLSPASVPKSGSG
FDIAVACAVLAAAERIDPRTIAGLMMIGELGLDGRILPVRGVLPAVLAAVDAGYRHVVVPDQTAAEASLVPEVSVTAVRS
LSQLIAHLTGEPPPEESDDRPDPPVPGGNTLQQFTDPRITADPGRDRLLDLADVTGQQHARRALEIAAAGRHHLFFTGPP
GAGKTMLAERLPGLLPPLSRTEALEVTAVHSVAGVLPPGQPLVVRPPYCAPHHSTTMAALIGGGTGVPRPGAVSLAHRGV
LFLDEAAECGPRVLDAMRQPLESGHVTVARAAGMMRMPAAFLLVLAANPCPCGRHGSPGTAALGCECPPASVHRYRARLS
GPLLDRVDLRVPVQPLGRAELAAAGTRGEPTAAVADRVAEARHRAEARYRETPWKTNSEVPGHELRTRYPAESGALHEAE
ADLEHGVLTARGLDRVLRVAWTIADLAGHPCPTRDDVNSALEMRTGVRRGRLVPERPA

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=252373 DEH18_RS25605 WP_159788586.1 6479007..6480623(-) (comM) [Streptomyces sp. NHF165]
ATGGCATTCGCCCGGACCAGCTCCGTCGCCCTCGTCGGCGTCGAAGGCGTACCCGTCGAGGTACAGGCCGACCTCGAACC
CGGCGTCGCCGCCTTCACCCTCGTCGGCCTCCCGGACAAGAGCCTCACCGAAAGCCGCGACCGGGTACGCGCCGCCGTCG
TCAACTCCGGTGTGCCCTGGCCCCAGAAAAAGCTCACCGTGGGACTCAGCCCGGCCTCCGTGCCCAAGAGCGGCAGCGGC
TTCGACATCGCCGTGGCCTGCGCCGTCCTCGCCGCCGCCGAACGCATCGACCCCCGCACCATCGCCGGGCTCATGATGAT
CGGCGAACTCGGCCTGGACGGCCGCATCCTGCCCGTCCGCGGCGTCCTCCCGGCCGTCCTCGCCGCCGTCGACGCCGGAT
ACCGGCACGTCGTCGTCCCCGACCAGACCGCGGCCGAAGCCTCCCTCGTCCCCGAGGTCTCGGTCACCGCAGTACGCAGC
CTCAGCCAGCTCATCGCCCACCTGACCGGCGAACCCCCACCCGAGGAGAGCGACGACCGCCCCGACCCACCCGTCCCCGG
CGGAAACACCCTGCAACAGTTCACCGACCCCCGCATCACCGCCGACCCCGGCCGCGACCGCCTCCTGGACCTCGCCGACG
TCACCGGCCAGCAACACGCCCGCCGTGCCCTCGAAATCGCCGCCGCCGGACGACACCACCTCTTCTTCACCGGGCCACCC
GGAGCCGGGAAAACGATGCTCGCCGAACGCCTCCCCGGGCTGCTGCCACCGCTCAGCCGCACCGAAGCCCTCGAAGTCAC
CGCCGTGCACTCCGTCGCCGGAGTACTCCCGCCCGGCCAGCCCCTCGTCGTCCGGCCGCCCTACTGCGCACCACACCACT
CCACCACCATGGCCGCACTCATCGGCGGCGGCACCGGCGTACCCCGGCCCGGAGCCGTCTCCCTCGCCCACCGAGGCGTC
CTCTTCCTCGACGAAGCAGCCGAATGCGGCCCCCGCGTCCTCGACGCCATGCGGCAACCCCTCGAATCAGGCCACGTCAC
CGTCGCCCGCGCCGCCGGCATGATGCGCATGCCCGCCGCCTTCCTCCTCGTCCTCGCCGCCAACCCCTGCCCCTGCGGCC
GGCACGGCAGCCCCGGCACCGCCGCCCTGGGCTGCGAATGCCCTCCCGCCTCCGTCCACCGCTACCGCGCCCGGCTCTCC
GGCCCCCTCCTCGACCGCGTCGACCTGCGCGTCCCCGTCCAGCCCCTCGGCCGCGCCGAACTGGCCGCCGCCGGAACACG
CGGCGAACCCACCGCGGCGGTCGCCGACCGCGTGGCAGAAGCCCGGCACCGGGCCGAAGCCCGCTACCGGGAAACCCCCT
GGAAGACCAACAGCGAAGTCCCCGGCCACGAACTGCGCACCCGCTACCCCGCCGAATCCGGCGCCCTCCACGAAGCGGAA
GCCGACCTCGAACACGGCGTTCTCACCGCACGCGGCCTCGACCGGGTACTCCGCGTCGCCTGGACCATCGCCGACCTCGC
AGGCCACCCCTGCCCCACCCGCGACGACGTGAACAGCGCGCTGGAGATGCGCACCGGCGTCCGACGCGGCCGACTCGTAC
CGGAACGCCCCGCATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(210-418)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(428-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

42.476

97.584

0.414
  comM Vibrio cholerae strain A1552

42.476

97.584

0.414
  comM Vibrio campbellii strain DS40M4

41.794

97.398

0.407
  comM Haemophilus influenzae Rd KW20

39.36

98.699

0.388
  comM Glaesserella parasuis strain SC1401

40.9

94.981

0.388
  comM Acinetobacter baylyi ADP1

38.52

97.955

0.377
  comM Legionella pneumophila str. Paris

37.807

98.327

0.372
  comM Legionella pneumophila strain ERS1305867

37.807

98.327

0.372

Multiple sequence alignment