Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   SAB_RS08050 Genome accession   NC_007622
Coordinates   1630829..1631833 (-) Length   334 a.a.
NCBI ID   WP_001005765.1    Uniprot ID   Q2YT89
Organism   Staphylococcus aureus RF122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1625829..1636833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS08035 (SAB1507c) yajC 1628361..1628621 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SAB_RS08040 (SAB1508c) tgt 1628640..1629779 (-) 1140 WP_001112041.1 tRNA guanosine(34) transglycosylase Tgt -
  SAB_RS08045 (SAB1509c) queA 1629802..1630827 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SAB_RS08050 (SAB1510c) ruvB 1630829..1631833 (-) 1005 WP_001005765.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SAB_RS08055 (SAB1511c) ruvA 1631865..1632467 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SAB_RS08060 (SAB1512c) - 1632481..1632936 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SAB_RS08065 (SAB1513c) obgE 1632949..1634241 (-) 1293 WP_000496109.1 GTPase ObgE -
  SAB_RS08070 (SAB1514c) rpmA 1634464..1634748 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAB_RS08075 (SAB1515c) - 1634760..1635080 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SAB_RS08080 (SAB1516c) rplU 1635086..1635394 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SAB_RS08085 (SAB1517c) mreD 1635561..1636091 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37631.91 Da        Isoelectric Point: 5.1844

>NTDB_id=25225 SAB_RS08050 WP_001005765.1 1630829..1631833(-) (ruvB) [Staphylococcus aureus RF122]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYGHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=25225 SAB_RS08050 WP_001005765.1 1630829..1631833(-) (ruvB) [Staphylococcus aureus RF122]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGATGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAACACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATCGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGGACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae R6

57.576

98.802

0.569
  ruvB Streptococcus pneumoniae D39

57.576

98.802

0.569
  ruvB Helicobacter pylori 26695

56.875

95.808

0.545
  ruvB Synechocystis sp. PCC 6803

53.438

95.808

0.512

Multiple sequence alignment