Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SAB_RS08055 Genome accession   NC_007622
Coordinates   1631865..1632467 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus RF122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1626865..1637467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS08035 (SAB1507c) yajC 1628361..1628621 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SAB_RS08040 (SAB1508c) tgt 1628640..1629779 (-) 1140 WP_001112041.1 tRNA guanosine(34) transglycosylase Tgt -
  SAB_RS08045 (SAB1509c) queA 1629802..1630827 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SAB_RS08050 (SAB1510c) ruvB 1630829..1631833 (-) 1005 WP_001005765.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SAB_RS08055 (SAB1511c) ruvA 1631865..1632467 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SAB_RS08060 (SAB1512c) - 1632481..1632936 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SAB_RS08065 (SAB1513c) obgE 1632949..1634241 (-) 1293 WP_000496109.1 GTPase ObgE -
  SAB_RS08070 (SAB1514c) rpmA 1634464..1634748 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAB_RS08075 (SAB1515c) - 1634760..1635080 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SAB_RS08080 (SAB1516c) rplU 1635086..1635394 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SAB_RS08085 (SAB1517c) mreD 1635561..1636091 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  SAB_RS08090 (SAB1518c) mreC 1636091..1636933 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  SAB_RS08095 - 1637131..1637250 (-) 120 WP_000840603.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=25226 SAB_RS08055 WP_000271547.1 1631865..1632467(-) (ruvA) [Staphylococcus aureus RF122]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=25226 SAB_RS08055 WP_000271547.1 1631865..1632467(-) (ruvA) [Staphylococcus aureus RF122]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGCCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCTATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425